PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5jd0A_

Fold library id	PDB Header	Molecule	Title
c5jd0A_	2.30	PDB header: signaling protein	Chain: A: PDB Molecule: arf-gap with rho-gap domain, ank repeat and ph domain-

Links to external resources
Added to library: Sat Jun 25 08:21:21 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T G L Q E Q Q M S R G D I P I I V D A C I S F V T Q H G L R L E G V Y R K G G A R A R S L R L L A E F R R D A R S V K L R P G E H F V E D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
B
T T S S B T T T S T T T T
S
S
G G G
T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T D T L K R F F R E L D D P V T S A R L L P R W R E A A E L P Q K N Q R L E K Y K D V I G C L P R V N R R T L A T L I G H L Y R V Q K C A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
T T T T
S S T T S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 .

Sequence L N Q M C T R N L A L L F A P S V F Q T D G R G E H E V R V L Q E L I D G Y I S V F D I D S D Q V A Q I D L E V S L I T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	G	L	Q	E	Q	Q	M	S	R	G	D	I	P	I	I	V	D	A	C	I	S	F	V	T	Q	H	G	L	R	L	E	G	V	Y	R	K	G	G	A	R	A	R	S	L	R	L	L	A	E	F	R	R	D	A	R	S	V	K	L	R	P	G	E	H	F	V	E	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	S		B		T	T	S	S	B														T	T	T	S	T	T	T	T		S		S																G	G	G					T	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	D	T	L	K	R	F	F	R	E	L	D	D	P	V	T	S	A	R	L	L	P	R	W	R	E	A	A	E	L	P	Q	K	N	Q	R	L	E	K	Y	K	D	V	I	G	C	L	P	R	V	N	R	R	T	L	A	T	L	I	G	H	L	Y	R	V	Q	K	C	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S		S	S		T	T	T									T		S	S													T	T	S																					T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Sequence	L	N	Q	M	C	T	R	N	L	A	L	L	F	A	P	S	V	F	Q	T	D	G	R	G	E	H	E	V	R	V	L	Q	E	L	I	D	G	Y	I	S	V	F	D	I	D	S	D	Q	V	A	Q	I	D	L	E	V	S	L	I	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S		T	T															T					T	T