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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5j9hA_

Fold library idPDB HeaderMoleculeTitle
c5j9hA_2.50PDB header: viral proteinChain: A: PDB Molecule: envelopment polyprotein;


Added to library: Thu Feb 9 11:27:33 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GWTDTAHGSGIIPMKTDLELDFSLPSSASYTYRRQLQNPANEQEKIPFHLQLSKQVIHAEIQHLGHWMDA
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Known secondary structure (DSSP)

BS


S

GGG

TT

TT


 .........80.........90.........100.........110.........120.........130.........140
Sequence TFNLKTAFHCYGSCEKYAYPWQTAGCFIEKDYEYETGWGCNPPDCPGVGTGCTACGVYLDKLKSVGKVFK
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Known secondary structure (DSSP)

BSSS
TTSS

GGGGSS

BT


SSSS
TT


SS
SB

 .........150.........160.........170.........180.........190.........200.........210
Sequence IVSLRYTRKVCIQLGTEQTCKTVDSNDCLITTSVKVCLIGTISKFQPSDTLLFLGPLQQGGLIFKQWCTT
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Known secondary structure (DSSP) TTTT

SS



S

TT
SS
GGG
S



S
 .........220.........230.........240.........250.........260.........270.........280
Sequence TCQFGDPGDIMSTPTGMKCPELNGSFRKKCAFATTPVCQFDGNTISGYKRMIATKDSFQSFNVTEPHIST
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Known secondary structure (DSSP)

BTTSTT
STT

B





SS



S

S
TGGGS


S
 .........290.........300.........310.........320.........330.........340.........350
Sequence SALEWIDPDSSLRDHINVIVSRDLSFQDLSETPCQIDLATASIDGAWGSGVGFNLVCTVSLTECSAFLTS
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Known secondary structure (DSSP) S


TT


STT
TT

S
BSS
SS
 .........360.........370.........380.........390.........400.........410...
Sequence IKACDAAMCYGSTTANLVRGQNTIHIVGKGGHSGSKFMCCHDTKCSSTGLVAAAPHLDRVTGY
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Known secondary structure (DSSP)
SS






TT

BTT
S

B

B










Download:PDB structure FASTA sequence

Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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