PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5ikyA_

Fold library id	PDB Header	Molecule	Title
c5ikyA_	2.50	PDB header: hydrolase,lyase	Chain: A: PDB Molecule: oxalate biosynthetic component 1;

Links to external resources
Added to library: Sat Jun 4 08:19:01 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V K T F Y I T A A P V G A V P K F L D P L E P K F I P H A L L E L L P A D R R E A T I K A L E A N G W E A V P A G G I V R E Y G Y D A P I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
T T S
S T S
T T
S
S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L T D Y A S A T V H D A L R N N G W T P S G S V W H R T Q T S P S L A Q P P L I T R N T L E R L S S V D L V R Q I V L Q L T T F G W T A T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
T T T T
S S S
T
S
T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D G S L T W A H D R I H T Y L S P D F V E R M R A D N A A V L D S L F E N G W R M C G A G H W Q P G K A R S P Y L P I T A N G I V D A S R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S S
T T T T T
S
T T T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A L R E G A A V V H L H T R A T D D Q A T L A I P G L N T P I G I G S Q R N H I V L D D Y D R I M P T L L D L E P S A I L N L S T S A R G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
B
T T
T T B S S
B
T T
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence R R A S Q S P L R R A H L K R Y G H A Q L A P D V A S F S P G P V V F Q A G G G Y D N P N A F L A D Q L A H F A E V G V R P E I E V F N H T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T
T T
S
B T T T T B
S
S S
B T T S
T
B

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence I V E N S V T L Y Q S P L V K A G V P V L F M L V A A V D Q Y H R D P V S G D T S D D S L I D V P T R K A I A K L L Q A G T D D A H E K A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
S S T T
B
T T T
B S S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence E L A A T Q L R P T V E K L R D N F P S C K I S L L L P G P F Q A L L V D V A I A L D L D G I R V G L E D A L N V F D A R V P G G V R K A C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G G G G T T
S S T T T
S
T T S T T S
S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence G T G D Q V R W L R R E L E R R G I G I V D A E T L R D E L G M S R P D V A L F R Q A E A A L A H Y P A D E R L V S A D T I L D A L H P I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
T T
T T T S
S
T T S
T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence D T Y R K I E D R L A A H L A S A P A D P A A L A E H V L T A A R S F G I T I R S F V E E L D R Y E D H E Y L V A R Y I Q I P Q A L N F A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S T T T T
G G G G G G
T T
T T
S T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence E L L V P R G Y S I E A Y D R A L E D Y S Y S V R V D Q F K P L P L R C L E Y L V G I P C R Y N S D Y S N V V N L G L R Q S P R Y S A T M A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T
S S S
G G G G
G G G S
T T S T T
T T S S
G G G G S T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence L L Y H A L R E L T L E L R D R S N A S R K A C G P L W T V L E T V R R D V A P D E L A A A I A S V D W V V L P S T P T T N Y P L G I K L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
B S
S S
S
S
S S
S S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence N G M A Q L F H G F V A Q I A A D P P L R L L A I T H S G R R D D G E T V I E A S M L H N R F A L N A D P S G I Y F S E E S Q L I Y E R L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S B
T T
B
T
S S S
T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence L P R L V D K P A K L A Y T E R Q L R I N A E Q I E R L P L L K C F A H S S G I A T A Q Q L D V Q A C R D G E R L G L T G D E L R A F F D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G S S S
B
T T S
B
G G G T T T S
T
T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence A L L V S F G S A A D I H L D W L G T S V V D V T A F N D V R S L A G T T S R H Y V I Q P G E H A D V L Q H C L V H T Q P A D Y R Y D H A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S S
T T
T
G G G
S S
S
G G G
T T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . .

Sequence P V W Q D G R Q G K I V A R L T G V F L L D D H A R L D D G H S I R R Y L A A S P L W L R Q W I A R F H D A P A D T G A H A I L R E L Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
T T S S S
S T T
T
S
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	K	T	F	Y	I	T	A	A	P	V	G	A	V	P	K	F	L	D	P	L	E	P	K	F	I	P	H	A	L	L	E	L	L	P	A	D	R	R	E	A	T	I	K	A	L	E	A	N	G	W	E	A	V	P	A	G	G	I	V	R	E	Y	G	Y	D	A	P	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S		S	S						T	T	S		S									T	S															T	T						S								S		B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	T	D	Y	A	S	A	T	V	H	D	A	L	R	N	N	G	W	T	P	S	G	S	V	W	H	R	T	Q	T	S	P	S	L	A	Q	P	P	L	I	T	R	N	T	L	E	R	L	S	S	V	D	L	V	R	Q	I	V	L	Q	L	T	T	F	G	W	T	A	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G													T	T					T	T											S	S	S											T		S															T	T					T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	G	S	L	T	W	A	H	D	R	I	H	T	Y	L	S	P	D	F	V	E	R	M	R	A	D	N	A	A	V	L	D	S	L	F	E	N	G	W	R	M	C	G	A	G	H	W	Q	P	G	K	A	R	S	P	Y	L	P	I	T	A	N	G	I	V	D	A	S	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S						S	S																			T	T	T							T	T						S							T	T			T	T				S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	L	R	E	G	A	A	V	V	H	L	H	T	R	A	T	D	D	Q	A	T	L	A	I	P	G	L	N	T	P	I	G	I	G	S	Q	R	N	H	I	V	L	D	D	Y	D	R	I	M	P	T	L	L	D	L	E	P	S	A	I	L	N	L	S	T	S	A	R	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T		S							B			T	T							T	T	B	S	S									B																			T	T										T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	R	R	A	S	Q	S	P	L	R	R	A	H	L	K	R	Y	G	H	A	Q	L	A	P	D	V	A	S	F	S	P	G	P	V	V	F	Q	A	G	G	G	Y	D	N	P	N	A	F	L	A	D	Q	L	A	H	F	A	E	V	G	V	R	P	E	I	E	V	F	N	H	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	T	T		T					T		S		B	T	T	T	T	B			S						S	S				B	T	T	S																					T									B
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	I	V	E	N	S	V	T	L	Y	Q	S	P	L	V	K	A	G	V	P	V	L	F	M	L	V	A	A	V	D	Q	Y	H	R	D	P	V	S	G	D	T	S	D	D	S	L	I	D	V	P	T	R	K	A	I	A	K	L	L	Q	A	G	T	D	D	A	H	E	K	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T	T							T		S	S							T	T			B					T	T	T							B	S	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	E	L	A	A	T	Q	L	R	P	T	V	E	K	L	R	D	N	F	P	S	C	K	I	S	L	L	L	P	G	P	F	Q	A	L	L	V	D	V	A	I	A	L	D	L	D	G	I	R	V	G	L	E	D	A	L	N	V	F	D	A	R	V	P	G	G	V	R	K	A	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S	S									G	G	G	G	G	G								T	T		S					S	T	T	T		S					T	T	S	T	T	S					S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	G	T	G	D	Q	V	R	W	L	R	R	E	L	E	R	R	G	I	G	I	V	D	A	E	T	L	R	D	E	L	G	M	S	R	P	D	V	A	L	F	R	Q	A	E	A	A	L	A	H	Y	P	A	D	E	R	L	V	S	A	D	T	I	L	D	A	L	H	P	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S															T	T													T	T																T	T	T	S		S		T	T	S										T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	D	T	Y	R	K	I	E	D	R	L	A	A	H	L	A	S	A	P	A	D	P	A	A	L	A	E	H	V	L	T	A	A	R	S	F	G	I	T	I	R	S	F	V	E	E	L	D	R	Y	E	D	H	E	Y	L	V	A	R	Y	I	Q	I	P	Q	A	L	N	F	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T					S	S	T	T												T	T							G	G	G	G	G	G		T	T		T	T			S	T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	E	L	L	V	P	R	G	Y	S	I	E	A	Y	D	R	A	L	E	D	Y	S	Y	S	V	R	V	D	Q	F	K	P	L	P	L	R	C	L	E	Y	L	V	G	I	P	C	R	Y	N	S	D	Y	S	N	V	V	N	L	G	L	R	Q	S	P	R	Y	S	A	T	M	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	T				S	S	S		G	G	G	G								G	G	G	S												T	T	S	T	T				T	T	S	S						G	G	G	G	S	T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	L	L	Y	H	A	L	R	E	L	T	L	E	L	R	D	R	S	N	A	S	R	K	A	C	G	P	L	W	T	V	L	E	T	V	R	R	D	V	A	P	D	E	L	A	A	A	I	A	S	V	D	W	V	V	L	P	S	T	P	T	T	N	Y	P	L	G	I	K	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	T	T						B	S																S	S		S							S							S	S			S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	N	G	M	A	Q	L	F	H	G	F	V	A	Q	I	A	A	D	P	P	L	R	L	L	A	I	T	H	S	G	R	R	D	D	G	E	T	V	I	E	A	S	M	L	H	N	R	F	A	L	N	A	D	P	S	G	I	Y	F	S	E	E	S	Q	L	I	Y	E	R	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S													S	B		T	T			B															T		S	S	S															T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	L	P	R	L	V	D	K	P	A	K	L	A	Y	T	E	R	Q	L	R	I	N	A	E	Q	I	E	R	L	P	L	L	K	C	F	A	H	S	S	G	I	A	T	A	Q	Q	L	D	V	Q	A	C	R	D	G	E	R	L	G	L	T	G	D	E	L	R	A	F	F	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G	S	S	S				B		T	T	S		B					G	G	G	T	T	T	S										T																															T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	A	L	L	V	S	F	G	S	A	A	D	I	H	L	D	W	L	G	T	S	V	V	D	V	T	A	F	N	D	V	R	S	L	A	G	T	T	S	R	H	Y	V	I	Q	P	G	E	H	A	D	V	L	Q	H	C	L	V	H	T	Q	P	A	D	Y	R	Y	D	H	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S				T	T	S	S										T	T							T				G	G	G				S	S													S		G	G	G				T	T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.
Sequence	P	V	W	Q	D	G	R	Q	G	K	I	V	A	R	L	T	G	V	F	L	L	D	D	H	A	R	L	D	D	G	H	S	I	R	R	Y	L	A	A	S	P	L	W	L	R	Q	W	I	A	R	F	H	D	A	P	A	D	T	G	A	H	A	I	L	R	E	L	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S								S						T	T	S	S	S		S	T	T								T														S			S										T	T