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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ikkA_

Fold library idPDB HeaderMoleculeTitle
c5ikkA_2.40PDB header: transcriptionChain: A: PDB Molecule: histone deacetylase clr3;


Added to library: Sat Apr 23 08:24:45 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LKKSGLCYDPRMRFHATLSEHPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQ
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TT




S
TTTS

SS

TT
S





 .........80.........90.........100.........110.........120.........130.........140
Sequence EMYDKMSHEDLANLEKISDSLYYNNESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPPGHHALFNNVS
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GGGS

TTS
SSTTTTSSS


SS





 .........150.........160.........170.........180.........190.........200.........210
Sequence VTARSMLQRFPDKIKRVLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGTNYGCAENCGEGPG
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Known secondary structure (DSSP)
TTT
S

SSS

TT
SS
TTTTSTT

GGGSTT



GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence LGRTVNIPWSCAGMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAAYAHMTQML
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Known secondary structure (DSSP) TT
SSS

BT

S

TTBTT
TTT

BB
 .........290.........300.........310.........320.........330.........340.........350
Sequence MGLADGKVFISLEGGYNLDSISTSALAVAQSLLGIPPGRLHTTYACPQAVATINHVTKIQSQYWRCMRPK
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Known secondary structure (DSSP) TTSGGG



S
TT





S




TTT
TTS
SB
 .........360.........370.........380.........390.........400.........410.........420
Sequence HFDANPKDAHVDRLHDVIRTYQAKKLFEDWKITNMPILRDNNQVLCSSNFFQKDNLLVIVHESPRVLGNG
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Known secondary structure (DSSP)




TTSTT












S
TTGGG
S




S
 .........430.........440.........450.........460.........470.........480.........490
Sequence TSETNVLNLNDSLLVDPVSLYVEWAMQQDWGLIDINIPEVDILSEVKELCLYVWDNYVELSISKNIFFIG
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Known secondary structure (DSSP)
TTBS


TTT

TTT





TTTTS

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence GGKAVHGLVNLASSRNVSDRVKCMVNFLGTEPLVGLKTASEEDLPTWYYRHSLVFVSSSNECWKKAKRAK
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Known secondary structure (DSSP) TTS

TTT
TTS






S
SST
TT
GGGTT




 .........570.........580.........590....
Sequence RRYGRLMQSEHTETSDMMEQHYRAVTQYLLHLLQ
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Known secondary structure (DSSP) GGG


S
SSST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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