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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ijnF_

Fold library idPDB HeaderMoleculeTitle
c5ijnF_21.40PDB header: transport proteinChain: F: PDB Molecule: nuclear pore complex protein nup54;


Added to library: Sat Apr 30 08:40:40 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TLLGDERDAILAKWNQLQAFWGTGKGYFNNNIDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTV
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Known secondary structure (DSSP)
S
SS
SS
TT







SS
TTT

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence NVEGTKTLPDDQTEVVIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTPAQIKQLLQ
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Known secondary structure (DSSP)
STT

TTS


TST


S
 .........150.........160.........170.........180.........190.........200.........210
Sequence NPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKNQTTS
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Known secondary structure (DSSP) S

SS


S
SSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence VAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGELNAPTQFKGRLNELMSQI
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Known secondary structure (DSSP) TT
SS


STT
 .........290.........300.........310.........320.........330.....
Sequence RMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLVEH
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Known secondary structure (DSSP)
STTGGGTT
TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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