PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5ijnD_

Fold library id	PDB Header	Molecule	Title
c5ijnD_	21.40	PDB header: transport protein	Chain: D: PDB Molecule: nuclear pore complex protein nup205;

Links to external resources
Added to library: Sat Apr 30 08:41:24 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S A A S L W G P Y K D I W H K V G L L D K I L K K H K P D F I S L F K N P P K N V Q Q H E K V Q K A S T E G V G T R L L P E Q L I K E A F I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S G G G G G
S
S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L S D L F D I G E L A A V E L L L A G E H Q Q L V A V L L Y W D G K R C I A N S L K A L I Q S R R P E L A S M T T R F T G L T Y K V L T L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S Q I D V N N E F E K L Q R E R G L G S E K H R K E V S D L I K E C R Q S L A E S L F A W A C Q S P L G K E D T L L L I G H L E R V S L D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
T
S T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V N L A L L M A L L Y C F D I S F I E Q K Q Y I A T I H S R L Q D S Q L W K L P G L Q A T V R L A W A L A L R G I S Q L P D V T A L A E F T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T
G G G
S S
T T S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence E A D E A M A E L A I A D N V F L F L M E S V V V S Q E E F Y I R R V H N L I T D F L A L M P M K V K Q L R N R A D E D A R M M G N E P P I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence S L R R D L E H L M L L I G E L Y K K N P E L A L E Y W C P T V L S K F V R Q M G D L L P P T I Y I P Y L K M L Q G L A N G P Q C A H Y C F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
T S
S T
S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence S L L K V N V S W E H F F H S L M L Y H E H L R K D L Q K E Q D G L I A F L Q L T S T I I T W S E N A R L A L C E T P V V V I L G L L Q C S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S T
S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence I P L K A E L L K T L A A F G K S P E I A A S L W Q S L E Y T I L Q T V R I P S G I E V E L N E I E S R C E E Y P L T R A F C Q L I S T L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T
T T T
S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence E S S F P S N L G A G L R P P G F D P Y L Q F L R D S V F R F R T R A R A A E K W E V A E V V L E V F Y K L L R D Y E P Q L E D F G E E I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T T T T T S S
S S
T T
T S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence A Y K P P G F S L M Y H L L N E P M L E L A L S L L E E G V K K H L E K A V Q H C L A L L N L T L Q K E N L F M D L L R E S Q L V C P L E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T
S
T T T
T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence L L Q G I N P K A D N V V N I A R Y L Y H G N P E L A F E S A K I L C C I S G D S S L Y I I L K K L L D F I L K T G G G F Q R V R T H L Y G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence S L L Y Y L Q I A Q R P D E P D T L E A A K K T M W E R L T A P E D V F S K L Q R E N I A I I E S Y G A A L M E V V C R D A C D G H E I G R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T T B S S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence M L A L A L L D R I V S V D K Q Q Q W L L Y L S N S G Y L K V L V D S L V E D D R T L Q S L L T P Q P P L L K A L Y T Y E S K M A F L T R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence A K I Q Q G A L E L L R S G V I V R L A Q C Q V Y D M R P E T D M F I P T P V D R Y R Q I L L P A L Q L C Q V I L T S S M A Q H L Q A A G Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T
T S S S S
G G G
T T T T
S S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . .

Sequence V L Q F L I S H S D T I Q A I L R C Q D V S A G S L Q E L A L L T G I I S K A A L P G I L S E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S
S S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	A	A	S	L	W	G	P	Y	K	D	I	W	H	K	V	G	L	L	D	K	I	L	K	K	H	K	P	D	F	I	S	L	F	K	N	P	P	K	N	V	Q	Q	H	E	K	V	Q	K	A	S	T	E	G	V	G	T	R	L	L	P	E	Q	L	I	K	E	A	F	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S																				S	G	G	G	G	G					S					S								T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	S	D	L	F	D	I	G	E	L	A	A	V	E	L	L	L	A	G	E	H	Q	Q	L	V	A	V	L	L	Y	W	D	G	K	R	C	I	A	N	S	L	K	A	L	I	Q	S	R	R	P	E	L	A	S	M	T	T	R	F	T	G	L	T	Y	K	V	L	T	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T													S																																								T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	Q	I	D	V	N	N	E	F	E	K	L	Q	R	E	R	G	L	G	S	E	K	H	R	K	E	V	S	D	L	I	K	E	C	R	Q	S	L	A	E	S	L	F	A	W	A	C	Q	S	P	L	G	K	E	D	T	L	L	L	I	G	H	L	E	R	V	S	L	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S												T	T	S																														T				S													T					T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	N	L	A	L	L	M	A	L	L	Y	C	F	D	I	S	F	I	E	Q	K	Q	Y	I	A	T	I	H	S	R	L	Q	D	S	Q	L	W	K	L	P	G	L	Q	A	T	V	R	L	A	W	A	L	A	L	R	G	I	S	Q	L	P	D	V	T	A	L	A	E	F	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T														T		T	T	T															G	G	G		S	S																			T	T	S							S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	E	A	D	E	A	M	A	E	L	A	I	A	D	N	V	F	L	F	L	M	E	S	V	V	V	S	Q	E	E	F	Y	I	R	R	V	H	N	L	I	T	D	F	L	A	L	M	P	M	K	V	K	Q	L	R	N	R	A	D	E	D	A	R	M	M	G	N	E	P	P	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T										T	T																																															S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	S	L	R	R	D	L	E	H	L	M	L	L	I	G	E	L	Y	K	K	N	P	E	L	A	L	E	Y	W	C	P	T	V	L	S	K	F	V	R	Q	M	G	D	L	L	P	P	T	I	Y	I	P	Y	L	K	M	L	Q	G	L	A	N	G	P	Q	C	A	H	Y	C	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T														S	S					T					S																S															T		S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	S	L	L	K	V	N	V	S	W	E	H	F	F	H	S	L	M	L	Y	H	E	H	L	R	K	D	L	Q	K	E	Q	D	G	L	I	A	F	L	Q	L	T	S	T	I	I	T	W	S	E	N	A	R	L	A	L	C	E	T	P	V	V	V	I	L	G	L	L	Q	C	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																															T		S	T																			S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	I	P	L	K	A	E	L	L	K	T	L	A	A	F	G	K	S	P	E	I	A	A	S	L	W	Q	S	L	E	Y	T	I	L	Q	T	V	R	I	P	S	G	I	E	V	E	L	N	E	I	E	S	R	C	E	E	Y	P	L	T	R	A	F	C	Q	L	I	S	T	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S	S	S	T	T												T	T	T																				S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	E	S	S	F	P	S	N	L	G	A	G	L	R	P	P	G	F	D	P	Y	L	Q	F	L	R	D	S	V	F	R	F	R	T	R	A	R	A	A	E	K	W	E	V	A	E	V	V	L	E	V	F	Y	K	L	L	R	D	Y	E	P	Q	L	E	D	F	G	E	E	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T				T	T	T	T	T	T	T	S	S		S	S															T	T																								T	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	A	Y	K	P	P	G	F	S	L	M	Y	H	L	L	N	E	P	M	L	E	L	A	L	S	L	L	E	E	G	V	K	K	H	L	E	K	A	V	Q	H	C	L	A	L	L	N	L	T	L	Q	K	E	N	L	F	M	D	L	L	R	E	S	Q	L	V	C	P	L	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	T																							S																													T					T	T						T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	L	L	Q	G	I	N	P	K	A	D	N	V	V	N	I	A	R	Y	L	Y	H	G	N	P	E	L	A	F	E	S	A	K	I	L	C	C	I	S	G	D	S	S	L	Y	I	I	L	K	K	L	L	D	F	I	L	K	T	G	G	G	F	Q	R	V	R	T	H	L	Y	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																																							T																	T			S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	S	L	L	Y	Y	L	Q	I	A	Q	R	P	D	E	P	D	T	L	E	A	A	K	K	T	M	W	E	R	L	T	A	P	E	D	V	F	S	K	L	Q	R	E	N	I	A	I	I	E	S	Y	G	A	A	L	M	E	V	V	C	R	D	A	C	D	G	H	E	I	G	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S		S														T	T	B	S	S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	M	L	A	L	A	L	L	D	R	I	V	S	V	D	K	Q	Q	Q	W	L	L	Y	L	S	N	S	G	Y	L	K	V	L	V	D	S	L	V	E	D	D	R	T	L	Q	S	L	L	T	P	Q	P	P	L	L	K	A	L	Y	T	Y	E	S	K	M	A	F	L	T	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																														T	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	A	K	I	Q	Q	G	A	L	E	L	L	R	S	G	V	I	V	R	L	A	Q	C	Q	V	Y	D	M	R	P	E	T	D	M	F	I	P	T	P	V	D	R	Y	R	Q	I	L	L	P	A	L	Q	L	C	Q	V	I	L	T	S	S	M	A	Q	H	L	Q	A	A	G	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	S										T										T	S	S	S	S		G	G	G				T																								T	T	T		S	S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.
Sequence	V	L	Q	F	L	I	S	H	S	D	T	I	Q	A	I	L	R	C	Q	D	V	S	A	G	S	L	Q	E	L	A	L	L	T	G	I	I	S	K	A	A	L	P	G	I	L	S	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T						T	S			S																				S	S