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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ig8A_

Fold library idPDB HeaderMoleculeTitle
c5ig8A_2.28PDB header: ligaseChain: A: PDB Molecule: atp grasp ligase;


Added to library: Thu Feb 9 14:38:46 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PKVVLLLTHSGDFFTIDRVAEAIEKKGATPFRLDTDKFPLEVQLTAQFNGKKSFYQLSYNHQSIDSEQVQ
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Known secondary structure (DSSP)


TT

T

GGGTTTT

SSS


TTGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence SVWTRRIWQPELTGDLDPQFREVCVRESQTTLAGFWDSLRSARWLDNLAQIEKAKNKLLQLRLASEVGLI
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Known secondary structure (DSSP) S







S


TTTSS
T
TT
B
 .........150.........160.........170.........180.........190.........200.........210
Sequence IPPTLVTNNPDAAREFFSQVQGRMVSKLLTAIARSMESPEFFLYTSRVKAEDLEEAESLRYCPMVFQAEI
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Known secondary structure (DSSP)


S
SSTT



SSSS





S

GGGTT



 .........220.........230.........240.........250.........260.........270.........280
Sequence PKQLELRVVVVNGQTFVGALESSQGAWQHHTLPDSLLQQLQIFMANLGLNFGAFDFILTPGGEYVFLEVN
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Known secondary structure (DSSP)

STT





B




TT
S
TT


 .........290.........300.......
Sequence PGGEWGMLERDLDLPISQAIADFLVFG
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Known secondary structure (DSSP) TT







Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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