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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ifeA_

Fold library idPDB HeaderMoleculeTitle
c5ifeA_3.10PDB header: splicingChain: A: PDB Molecule: splicing factor 3b subunit 3;


Added to library: Thu Feb 9 11:44:23 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VDMFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAF
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Known secondary structure (DSSP)








S
TTSSS


SS
TTT


SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence RLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGRAVMISAIEKQ
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Known secondary structure (DSSP)

TT

S
SSSTTTT
S
SSS
SSSS
S
TTSS
SBS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTL
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Known secondary structure (DSSP)
TTS






TT

SSSS

TTTTS
TTSTTTTT


 .........220.........230.........240.........250.........260.........270.........280
Sequence TFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDL
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Known secondary structure (DSSP) TTTT
SS


TTSS

TT

SSS




TT

 .........290.........300.........310.........320.........330.........340.........350
Sequence DDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLF
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Known secondary structure (DSSP) S
TTS



SS
TT
TT
S
TTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
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Known secondary structure (DSSP) SSS

S
S
SSSS
TTS








S
SS



S

SSSSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGET
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Known secondary structure (DSSP)


GGG
B


SS



SSTT
SS


SS

SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence VEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTG
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Known secondary structure (DSSP)

STTS


SS

S
SSS
TT
SSS

STT


SSTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence GELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSM
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Known secondary structure (DSSP) T
TTS

S


SS




SSSSS

TTS
SGGGTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence QALPAQPESLCIVEMFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTGSRPVKLFRVRMQGQEAVLAMSSRS
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Known secondary structure (DSSP)
SS


SSSSSS





S

TTSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence WLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFV
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Known secondary structure (DSSP) SSS
BSS


S

SS
SSTT



S

SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence IHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGELAAEMAAAFLNENLPESIFGAPKAGNGQWA
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Known secondary structure (DSSP)
TTT

T


TT







TT



TTTS





SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence SVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNN
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Known secondary structure (DSSP)
SSSS


SS

SSS
S

S
BTTTTB



 .........920.........930.........940.........950.........960.........970.........980
Sequence GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVS
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Known secondary structure (DSSP) TB

SS
TTTT

SSS



SS


SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence DVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDNGASQK
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Known secondary structure (DSSP) SSB
TTTTSS
B

SSSTTS

TT

S




SSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence AEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGR
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Known secondary structure (DSSP)
SS
SSTTS
TTS



SSS

TTS
 .........1130.........1140.........1150.........1160.........1170.........1180....
Sequence DHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTRYAFDYKDD
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Known secondary structure (DSSP)
TSSS

BSGGGGGS
TTS
S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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