PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5i6fB_

Fold library id	PDB Header	Molecule	Title
c5i6fB_	3.60	PDB header: ligase	Chain: B: PDB Molecule: acetyl-coa carboxylase-like protein;

Links to external resources
Added to library: Sat Apr 23 08:27:41 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I R K G V I V P C K D L L D A E E A L S R A L E V L P A V V N V A V R D A E G K N D E E I L A L I K P W V Q N S K A D L L A R R V R R L T F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S S T T G G G T G G G S
S
S S T T T T T T T T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I C G R N D G S Y P S Y Y T F R G P D Y A E D D S I R H I E P S L A F Q L E L G R L S K F K L T P V F T Q N K N I H V Y E A V G R G V E T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
B
T T T T
S S S B S S
T T T
S S
S S
S S T T S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R R Y F T R A V V R P G R L A E Y L I S E A D R V V N D I F D A L E I I G T N K T D L N H M F I N F S H T F Q V T A D E V A E S L Q G F L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R F G P R G W R L R V H Q V E I R I N C M R S E N D T M P L R V I I T N T S G F V I Q I E L Y E E K L S E K G E W V Y Y Y V S G N A K I G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T S S
S S S S
S S
S
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence M H L L P V S T P Y P T K N W L Q P K R Y K A H I L G T Q Y V Y D F P E L F R Q A I Q N S W T E A V K K I P S L A A K Q P A I G E C I D Y N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B T T
T T S S T T T S
G G G S
S T T T T
S S S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence E L V L G D Q D N L A E V S R E P G M N S T G M V G W L I N A R T P E Y P D G R K F I V V A N D I T F K I G S F G P K E D T F F F K C T E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S
S S S
S S S T T
T T S G G G
B

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence A R K M G I P R I Y L S A N S G A R L G L A E E L M P H F N V A W N D P A K P E A G F K Y L Y L S D E A K R R F E N E V I T E E I V E D G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B
S T T T T T
S
S S
T T S
T T T S S S T T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence K R H K I I T I V G A E E G L G V E C L R G S G L I A G A T S R A Y N D I F T C T L V T C R S V G I G A Y L V R L G Q R A V Q V E G Q P I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S S T T S
S S
T T
T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence L T G A P A L N S L L G R E V Y T S N L Q L G G T Q I M Y R N G V S H L T A K D D F D G V T K I V Q W L S F I P D Q R N N P L P I L S P S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T S
T S T S
S S S S
S S S S
S T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence D P W D R D V V Y T P P Y K Q T Y D V R W M I A G K E D E D G F Q P G L F D K D S F V E T L G G W A R T V V V G R A R L G G I P M G V I A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S S S
T T
S S S
S S
T T
S T T S
T T T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence E T R T I E N I T P A D P A N P D S I E Q V T N E A G G V W Y P N S A F K T A Q A I N D F N Y G E Q L P L M I L A N W R G F S G G Q R D M Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
T T
T T
B
T T T
B
S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence N E V L K Y G S F I V D A L T R F E K P I F I Y I P P H G E L R G G S W V V V D P T I N P A S M E M Y A D E E A R G G V L E P E G I I P I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
B
T T
G G G S T T T T T
B
S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence Y K K D K Q L E T M A R L D P V Y R S L K K E M A K E G L S K E E S D N I K K K M Q Q R E E L L L P I Y H Q I C V Q F A D L H D R A G R M K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T
B

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence A K G V I R Q S L Q W R Q S R R F F Y W R V R R R L I E D D I L R R I E E A I N P A N T S L A A S P E T R S P H L V Q L E S W V G I P G F K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S
G G G
S S
G G G S S T T T T
T T
S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . .

Sequence T N D R E V V E W Y E Q N Q D R I N E K L E K L K K E S I A D Q M R E L L R A A E X X X X X X X X X X X X X X X X X X X X X X X X X X X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T
T T T S S
S T T T T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	R	K	G	V	I	V	P	C	K	D	L	L	D	A	E	E	A	L	S	R	A	L	E	V	L	P	A	V	V	N	V	A	V	R	D	A	E	G	K	N	D	E	E	I	L	A	L	I	K	P	W	V	Q	N	S	K	A	D	L	L	A	R	R	V	R	R	L	T	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									B	S	S	T	T	G	G	G					T	G	G	G	S													S				S	S	T	T	T	T	T	T							T	T	T					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	C	G	R	N	D	G	S	Y	P	S	Y	Y	T	F	R	G	P	D	Y	A	E	D	D	S	I	R	H	I	E	P	S	L	A	F	Q	L	E	L	G	R	L	S	K	F	K	L	T	P	V	F	T	Q	N	K	N	I	H	V	Y	E	A	V	G	R	G	V	E	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S						B				T	T	T	T				S	S	S	B	S	S		T	T	T							S	S		S	S									S	S	T	T									S	S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	R	Y	F	T	R	A	V	V	R	P	G	R	L	A	E	Y	L	I	S	E	A	D	R	V	V	N	D	I	F	D	A	L	E	I	I	G	T	N	K	T	D	L	N	H	M	F	I	N	F	S	H	T	F	Q	V	T	A	D	E	V	A	E	S	L	Q	G	F	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T																								S		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	F	G	P	R	G	W	R	L	R	V	H	Q	V	E	I	R	I	N	C	M	R	S	E	N	D	T	M	P	L	R	V	I	I	T	N	T	S	G	F	V	I	Q	I	E	L	Y	E	E	K	L	S	E	K	G	E	W	V	Y	Y	Y	V	S	G	N	A	K	I	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T											S																T	T	S	S													S	S	S	S								S	S		S		S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	M	H	L	L	P	V	S	T	P	Y	P	T	K	N	W	L	Q	P	K	R	Y	K	A	H	I	L	G	T	Q	Y	V	Y	D	F	P	E	L	F	R	Q	A	I	Q	N	S	W	T	E	A	V	K	K	I	P	S	L	A	A	K	Q	P	A	I	G	E	C	I	D	Y	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		B	T	T						T	T	S	S									T	T	T	S			G	G	G																				S		S	T	T	T	T				S	S	S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	E	L	V	L	G	D	Q	D	N	L	A	E	V	S	R	E	P	G	M	N	S	T	G	M	V	G	W	L	I	N	A	R	T	P	E	Y	P	D	G	R	K	F	I	V	V	A	N	D	I	T	F	K	I	G	S	F	G	P	K	E	D	T	F	F	F	K	C	T	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S									S	S			S	S	S											S	S	S	T	T											T	T	S	G	G	G		B
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	A	R	K	M	G	I	P	R	I	Y	L	S	A	N	S	G	A	R	L	G	L	A	E	E	L	M	P	H	F	N	V	A	W	N	D	P	A	K	P	E	A	G	F	K	Y	L	Y	L	S	D	E	A	K	R	R	F	E	N	E	V	I	T	E	E	I	V	E	D	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S	B						S	T	T	T	T	T						S		S	S		T	T	S													T	T	T	S	S	S									T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	K	R	H	K	I	I	T	I	V	G	A	E	E	G	L	G	V	E	C	L	R	G	S	G	L	I	A	G	A	T	S	R	A	Y	N	D	I	F	T	C	T	L	V	T	C	R	S	V	G	I	G	A	Y	L	V	R	L	G	Q	R	A	V	Q	V	E	G	Q	P	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S	S	S	S																			T	T	S							S	S				T									T							T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	L	T	G	A	P	A	L	N	S	L	L	G	R	E	V	Y	T	S	N	L	Q	L	G	G	T	Q	I	M	Y	R	N	G	V	S	H	L	T	A	K	D	D	F	D	G	V	T	K	I	V	Q	W	L	S	F	I	P	D	Q	R	N	N	P	L	P	I	L	S	P	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S										T	S						T					S								T	S		S				S	S															S		S	S	S	S								S	T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	D	P	W	D	R	D	V	V	Y	T	P	P	Y	K	Q	T	Y	D	V	R	W	M	I	A	G	K	E	D	E	D	G	F	Q	P	G	L	F	D	K	D	S	F	V	E	T	L	G	G	W	A	R	T	V	V	V	G	R	A	R	L	G	G	I	P	M	G	V	I	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		T	T									S	S	S				T					T					S	S	S					S	S		T	T						S	T	T	S		T	T									T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	E	T	R	T	I	E	N	I	T	P	A	D	P	A	N	P	D	S	I	E	Q	V	T	N	E	A	G	G	V	W	Y	P	N	S	A	F	K	T	A	Q	A	I	N	D	F	N	Y	G	E	Q	L	P	L	M	I	L	A	N	W	R	G	F	S	G	G	Q	R	D	M	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S										S	S		T	T										T	T		B																	T	T	T													B			S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	N	E	V	L	K	Y	G	S	F	I	V	D	A	L	T	R	F	E	K	P	I	F	I	Y	I	P	P	H	G	E	L	R	G	G	S	W	V	V	V	D	P	T	I	N	P	A	S	M	E	M	Y	A	D	E	E	A	R	G	G	V	L	E	P	E	G	I	I	P	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																	S								T	T		B								T	T		G	G	G	S	T	T	T							T	T		B			S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	Y	K	K	D	K	Q	L	E	T	M	A	R	L	D	P	V	Y	R	S	L	K	K	E	M	A	K	E	G	L	S	K	E	E	S	D	N	I	K	K	K	M	Q	Q	R	E	E	L	L	L	P	I	Y	H	Q	I	C	V	Q	F	A	D	L	H	D	R	A	G	R	M	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																									T																																							B
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	A	K	G	V	I	R	Q	S	L	Q	W	R	Q	S	R	R	F	F	Y	W	R	V	R	R	R	L	I	E	D	D	I	L	R	R	I	E	E	A	I	N	P	A	N	T	S	L	A	A	S	P	E	T	R	S	P	H	L	V	Q	L	E	S	W	V	G	I	P	G	F	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S	S	S					G	G	G																																S	S				G	G	G	S	S	T	T	T	T									T	T		S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.
Sequence	T	N	D	R	E	V	V	E	W	Y	E	Q	N	Q	D	R	I	N	E	K	L	E	K	L	K	K	E	S	I	A	D	Q	M	R	E	L	L	R	A	A	E	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S												T																														T	T	T	S	S													S	T	T	T	T	T	S