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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5i5fA_

Fold library idPDB HeaderMoleculeTitle
c5i5fA_1.84PDB header: membrane proteinChain: A: PDB Molecule: inner membrane protein yejm;


Added to library: Thu Feb 9 17:38:05 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SVQYPLSNLHYRDMGTGQNVLLITVDGLNYSRFEKQMPELATFAEQNIDFTRHMSSGNTTDNGIFGLFYG
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Known secondary structure (DSSP)

S
SSS


BSSS




STT
TSSS
S
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence ISPGYMDGVLSTRTPAALITALNQQGYQLGLFSSDGFASPLYRQALLSDFSMPAAQTQSDAQTASQWIDW
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Known secondary structure (DSSP) S
GGGT


TT
TT
S
STTTTTS


S




 .........150.........160.........170.........180.........190.........200.........210
Sequence LGRYAQEDNRWFSWISFNGTNIDDSNQKNFVKRYASAASDVDAQINRVLNALREAGKFDNTVVIITAGRG
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Known secondary structure (DSSP) TS
TT


TT





STTTT
STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence IPLTPEENRFDWSQGHLQVPLVIHWPGTPAQRINVLTDHTDVMTTLMQRLLHVSTPANEYSQGQDIFTVP
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Known secondary structure (DSSP)


STGGGSSTTSB


TTS


S
TT
B
S
GGGT
S


TT
SS
 .........290.........300.........310.........320.........330.........
Sequence RRHNWVTAADGSTLAITTPQMTLVLNNNGHYQTYDLHGEKIPQLSLLLQVLTEEKRFIA
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Known secondary structure (DSSP)
S
S

SS
SS
TTS

TTS




TTT


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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