Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5i2dA_

Fold library idPDB HeaderMoleculeTitle
c5i2dA_4.41PDB header: transcription/dna/rnaChain: A: PDB Molecule: dna-directed rna polymerase subunit alpha;


Added to library: Sat Jun 25 08:18:49 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKE
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)





TTT
TTT

TT

STT


TTBSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence DVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVR
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)
TT

SSTT

SSGGGS


TTS
TT

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQ
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)
S



SSTT





TT
SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AVEILREHLTYFSNPQDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEAL
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) GGGSS



BT

TT

B

TTSSS
SS
 ....
Sequence EKKG
Predicted secondary structure

SS confidence



Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D