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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5i1mV_

Fold library idPDB HeaderMoleculeTitle
c5i1mV_7.00PDB header: membrane proteinChain: V: PDB Molecule: v-type proton atpase subunit a, vacuolar isoform;


Added to library: Sat Mar 12 08:54:20 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TNKFTAGFQSICDCYGIAQYREINAGLPTIVTFPFMFAIMFGDMGHGFLMTLAALSLVLNEKKINKMKRG
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Known secondary structure (DSSP)


S
TT

TTSTTTS

SSSTT


S
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EIFDMAFTGRYIILLMGVFSMYTGFLYNDIFSKTMTIFKSGWKWPDHWKKGESITATSVGTYPIGLDWAW
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Known secondary structure (DSSP) TSSSTTTT
S
SSSS
SS
S
BTTTBS
SSS
SSS



S
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence HGTENALLFSNSYKMKLSILMGFIHMTYSYFFSLANHLYFNSMIDIIGNFIPGLLFMQGIFGYLSVCIVY
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Known secondary structure (DSSP) S
BTTBSTTSTTTTTTT
TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KWAVDWVKDGKPAPGLLNMLINMFLSPGTIDDELYPHQAKVQVFLLLMALVCIPWLLLVKPLHFKFTHKK
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Known secondary structure (DSSP) TT

TTSS


SSTTTTTT
S
SS



SSSSSSTTSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KSHEPLPSTEADASSEDLEAQQLISAMDADDAEEEEVGSGSHGEDFGDIMIHQVIHTIEFCLNCVSHTAS
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Known secondary structure (DSSP) TTSGGG





STTSSSSTT
SSSSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence YLRLWALSLAHAQLSSVLWTMTIQIAFGFRGFVGVFMTVALFAMWFALTCAVLVLMEGTSAMLHSLRLHW
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Known secondary structure (DSSP) S

SS
 .........430.........440.........450........
Sequence VESMSKFFVGEGLPYEPFAFEYKDMEVAVASASSSASS
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Known secondary structure (DSSP) TSSS

SS
SSSSSTTSSGGG
TTS
SS

-


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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