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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5hy7B_

Fold library idPDB HeaderMoleculeTitle
c5hy7B_2.90PDB header: protein bindingChain: B: PDB Molecule: putative pre-mrna splicing protein;


Added to library: Thu Feb 9 12:02:32 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NMFLYSLTIQPPTTITQALLGQFSGTKEQQIITASGSRLTLLQPDPRQGKVNTIVSHDIFGIIRAMAAFR
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Known secondary structure (DSSP)







S
TTSSSS
TTTTTT
SS



 .........80.........90.........100.........110.........120.........130.........140
Sequence LAGSHKDYIILATDSGRIAIIEYLPKENRFQRIHLETFGKSGVRRVIPGQYLAADPKGRACLIASVEKNK
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Known secondary structure (DSSP)
TT




SSSTTTT
S
SS

TTSS
S
TTSS
SBS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LVYVLNRNAQAELTISSPLEAHKPGVIVLSLVALDVGYSNPVFAALEYEYSEADQDPTGQAAKQLEMQLV
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Known secondary structure (DSSP)
TTS






TT


TTSS

T
TT
SGGGS


 .........220.........230.........240.........250.........260.........270.........280
Sequence YYELDLGLNHVVRKWSDTVDPTSSLLFQVPGGNDGPSGVLVCGEENITYRHSNQEAFRVPIPRRRGATED
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Known secondary structure (DSSP) TTTT

TT




GGG



TTTT



STTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PNRKRTIVAGVMHKLKGSAGAFFFLLQTEDGDLFKVTIDMVEDEKGNPTGEVKRVKIKYFDTVPIAHSLC
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Known secondary structure (DSSP) TT




SS
SS
TTS
SSS



 .........360.........370.........380.........390.........400.........410.........420
Sequence ILKSGFLFVASEFGNHHFYQFEKLGDDDDEPEFTSDDFPADWNAPYNPVYFKPRPLENLVLVESIDSMNP
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Known secondary structure (DSSP) TTTSSS
S



STT

GGGS
SSSSS







S
SS



S
 .........430.........440.........450.........460.........470.........480.........490
Sequence LVGCKVANLTGEDAPQIYAICGNGARSSFRMLKHGLEVSEIVASELPGTPSAVWTTKLTKYDEYDAYIVL
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Known secondary structure (DSSP)



S

SS

SGGG
SB

SS

S
SSSS
SS

 .........500.........510.........520.........530.........540.........550.........560
Sequence SFTNATLVLSIGETVEEVSDSGFLTTVPTIQIHPKGIRHIVQGRVNEWPAPQHRSIVAATTNENQVVIAL
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Known secondary structure (DSSP)
SS

SSS





SS
SS

B



SSS

BTTB






TT


SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence SSGEIVYFEMDADGSLAEYDEKKQMSGTVTSLSLGKVPEGLRRSSFLAVGCDDCTVRILSLDPESTLEMK
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Known secondary structure (DSSP) SSS


TTS

B







SS




TTSSS

TTT
SSTT
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence SIQALTAAPSSLLIMSMEDSTGGTTLYLHIGLHSGVYLRTVLDEITGELTDTRQKFLGPKPTKLFQVTVQ
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Known secondary structure (DSSP)
SS



SSSS

TTS
SSS



SS

T
 .........710.........720.........730.........740.........750.........760.........770
Sequence NQTCVLALSSRPWLGYTAPITRNFVMTPLSYTELGYTWSFNSEQCQEGMVGIHANYLRIFTIEKLGQTMI
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Known secondary structure (DSSP) TSSS
TTT

BSS


S
TT

TT
STT

 .........780.........790.........800.........810.........820.........830.........840
Sequence QKSCPLTYTPKRLVKHPEQPYFYVIEADNNTLPPELRAQLDATVLPPEDFGYPKARGRWASCIEIVDPVS
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Known secondary structure (DSSP)
SS

SSSS
TTB

GGGG











B
TT


SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence EEQPRVLKRIELEGNEAAVSAAVVPFASQDGESFLIVGTGKDMVLNPRASTEGAIHVYRFIDDGRDLEFI
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Known secondary structure (DSSP) SSS


SS
GGGTT
S
TT
STTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence HKTIIEEPPLAFCPFQGRLLAGIGKMLRIYDLGLKQLLRKAQAEVSPQLIVSLDTRHNRIVVGDVQHGMT
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Known secondary structure (DSSP) SS


TTTT
SSS
SSS
TTTTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence YVVYKPDSNKLIPFADDTIARWTTCTTMVDYESVAGGDKFGNLWIVRCPERASLESDEPNRLDLMAHFYP
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Known secondary structure (DSSP) TTTT
SS


SSSSTTT

S





 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence QDLPTSICKTNLVVGGQDVLVWSGIQGTVGVLIPFVTREDADFFQNLESHMRAEDPPLAGRDHLIYRGYY
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Known secondary structure (DSSP) SS

SSTT


TTS


SSS

TTS

TTSS
 .........1130.........1140.........1150.........1160.........1170
Sequence VPVKGVIDGDLCERFTLLPNDKKQMIAGELDRSVREIERKISDIRTRSAF
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Known secondary structure (DSSP) S

BSGGGGGS
TS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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