PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5hx2A_

Fold library id	PDB Header	Molecule	Title
c5hx2A_	3.80	PDB header: viral protein	Chain: A: PDB Molecule: baseplate wedge protein gp7;

Links to external resources
Added to library: Sat Mar 5 08:26:04 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V K A P S V T S L R I S K L S A N Q V Q V R W D D V G A N F Y Y F V E I A E T K T N S G E N L P S N Q Y R W I N L G Y T A N N S F F F D D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S
S S
S S
S S S S
T T S S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D P L T T Y I I R V A T A A Q D F E Q S D W I Y T E E F E T F A T N A Y T F Q N M I E M Q L A N K F I Q E K F T L N N S D Y V N F N N D T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S B
T T
S S
B
B
S S
T T T
S S S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M A A L M N E S F Q F S P S Y V D V S S I S N F I I G E N E Y H E I Q G S I Q Q V C K D I N R V Y L M E S E G I L Y L F E R Y Q P V V K V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S
S
S T T S
B
B T T B S S S
S S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence N D K G Q T W K A V K L F N D R V G Y P L S K T V Y Y Q S A N T T Y V L G Y D K I F Y G R K S T D V R W S A D D V R F S S Q D I T F A K L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T S S
S
S S S
B
S S S
B
S S
S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence D Q L H L G F D V E I F A T Y A T L P A N V Y R I A E A I T C T D D Y I Y V V A R D K V R Y I K T S N A L I D F D P L S P T Y S E R L F E P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S S
S
S S S S S S S
S S B
S S S
B S S S
S S S
S S
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence D T M T I T G N P K A V C Y K M D S I C D K V F A L I I G E V E T L N A N P R T S K I I D S A D K G I Y V L N H D E K T W K R V F G N T E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
B
B
S S
B
B
S
S T T S S S S
T T S
T T
B
T T T T
S
S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence E R R R I Q P G Y A N M S T D G K L V S L S S S N F K F L S D N V V N D P E T A A K Y Q L I G A V K Y E F P R E W L A D K H Y H M M A F I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
T T T
B
G G G
T T S
S
B
S S S S
B

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence D E T S D W E T F T P Q P M K Y Y A E P F F N W S K K S N T R C W I N N S D R A V V V Y A D L K Y T K V I E N I P E T S P D R L V H E Y W D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T S
S
S S S S G G G S B
S G G G
T T S
B
S S S S
S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence D G D C T I V M P N V K F T G F K K Y A S G M L F Y K A S G E I I S Y Y D F N Y R V R D T V E I I W K P T E V F L K A F L Q N Q E H E T P W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
S
B
S S S
S S
S
T T T S
B
B

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence S P E E E R G L A D P D L R P L I G T M M P D S Y L L Q D S N F E A F C E A Y I Q Y L S D G Y G T Q Y N N L R N L I R N Q Y P R E E H A W E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S T T S
T T S S
S T S S S S S T T T T S S S T T S T T
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence Y L W S E I Y K R N I Y L N A D K R D A V A R F F E S R S Y D F Y S T K G I E A S Y K F L F K V L Y N E E V E I E I E S G A G T E Y D I I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S
S S T T S S S S S
T T S T T S S S S S
B S S
S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence Q S D S L T E D L V G Q T I Y T A T G R C N V T Y I E R S Y S N G K L Q W T V T I H N L L G R L I A G Q E V K A E R L P S F E G E I I R G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T S
S S
B
S S S
S
B
T T
S S S
S
B

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence K G K D L L Q N N I D Y I N R S R S Y Y V M K I K S N L P S S R W K S D V I R F V H P V G F G F I A I T L L T M F I N V G L T L K H T E T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
T T
B
S S
S T T T T T T S S
T T S
B

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence I N K Y K N Y K W D S G L P T E Y A D R I A K L T P T G E I E H D S V T G E A I Y E P G P M A G V K Y P L P D D Y N A E N N N S I F Q G Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S
S
B
S S T T T S S
S
S S S
S S
B
S
S T T
S S
B
S S S B S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030

Sequence P S E R R K L M S P L F D A S G T T F A Q F R D L V N K R L K D N I G N P R D P E N P T Q V K I D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
S
S S
S S S
S S S
B
S S
S S
S S S
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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All images and data generated by Phyre2 are free to use in any publication with acknowledgement
Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	K	A	P	S	V	T	S	L	R	I	S	K	L	S	A	N	Q	V	Q	V	R	W	D	D	V	G	A	N	F	Y	Y	F	V	E	I	A	E	T	K	T	N	S	G	E	N	L	P	S	N	Q	Y	R	W	I	N	L	G	Y	T	A	N	N	S	F	F	F	D	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B											S			S	S											S	S											S	S	S	S					T	T	S	S										S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	P	L	T	T	Y	I	I	R	V	A	T	A	A	Q	D	F	E	Q	S	D	W	I	Y	T	E	E	F	E	T	F	A	T	N	A	Y	T	F	Q	N	M	I	E	M	Q	L	A	N	K	F	I	Q	E	K	F	T	L	N	N	S	D	Y	V	N	F	N	N	D	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T												S	S	S	B								T	T					S	S			B			B			S	S												T	T	T				S	S	S		T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	A	A	L	M	N	E	S	F	Q	F	S	P	S	Y	V	D	V	S	S	I	S	N	F	I	I	G	E	N	E	Y	H	E	I	Q	G	S	I	Q	Q	V	C	K	D	I	N	R	V	Y	L	M	E	S	E	G	I	L	Y	L	F	E	R	Y	Q	P	V	V	K	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B					S	S					S				S					T	T	S			B														B	T	T	B	S	S	S						S	S	S							S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	N	D	K	G	Q	T	W	K	A	V	K	L	F	N	D	R	V	G	Y	P	L	S	K	T	V	Y	Y	Q	S	A	N	T	T	Y	V	L	G	Y	D	K	I	F	Y	G	R	K	S	T	D	V	R	W	S	A	D	D	V	R	F	S	S	Q	D	I	T	F	A	K	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	T	T	S	S									S						S	S	S				B		S	S	S			B				S	S										S																					S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	D	Q	L	H	L	G	F	D	V	E	I	F	A	T	Y	A	T	L	P	A	N	V	Y	R	I	A	E	A	I	T	C	T	D	D	Y	I	Y	V	V	A	R	D	K	V	R	Y	I	K	T	S	N	A	L	I	D	F	D	P	L	S	P	T	Y	S	E	R	L	F	E	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		T	T			S	S								S			S	S	S	S	S	S	S								S	S	B					S	S	S						B	S	S	S							S	S	S			S	S						S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	D	T	M	T	I	T	G	N	P	K	A	V	C	Y	K	M	D	S	I	C	D	K	V	F	A	L	I	I	G	E	V	E	T	L	N	A	N	P	R	T	S	K	I	I	D	S	A	D	K	G	I	Y	V	L	N	H	D	E	K	T	W	K	R	V	F	G	N	T	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T		T	T			B					B		S	S		B				B		S		S	T	T	S	S	S	S		T	T	S						T	T		B						T	T	T	T						S			S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	E	R	R	R	I	Q	P	G	Y	A	N	M	S	T	D	G	K	L	V	S	L	S	S	S	N	F	K	F	L	S	D	N	V	V	N	D	P	E	T	A	A	K	Y	Q	L	I	G	A	V	K	Y	E	F	P	R	E	W	L	A	D	K	H	Y	H	M	M	A	F	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T			S	S	S							T	T	T					B							G	G	G									T	T	S			S												B		S	S	S	S			B
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	D	E	T	S	D	W	E	T	F	T	P	Q	P	M	K	Y	Y	A	E	P	F	F	N	W	S	K	K	S	N	T	R	C	W	I	N	N	S	D	R	A	V	V	V	Y	A	D	L	K	Y	T	K	V	I	E	N	I	P	E	T	S	P	D	R	L	V	H	E	Y	W	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	T	T	T	S		S							S	S	S	S	G	G	G	S	B			S	G	G	G							T	T	S										B										S	S	S	S									S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	D	G	D	C	T	I	V	M	P	N	V	K	F	T	G	F	K	K	Y	A	S	G	M	L	F	Y	K	A	S	G	E	I	I	S	Y	Y	D	F	N	Y	R	V	R	D	T	V	E	I	I	W	K	P	T	E	V	F	L	K	A	F	L	Q	N	Q	E	H	E	T	P	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S																S				S				B		S	S	S									S	S				S							T	T	T	S				B			B
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	S	P	E	E	E	R	G	L	A	D	P	D	L	R	P	L	I	G	T	M	M	P	D	S	Y	L	L	Q	D	S	N	F	E	A	F	C	E	A	Y	I	Q	Y	L	S	D	G	Y	G	T	Q	Y	N	N	L	R	N	L	I	R	N	Q	Y	P	R	E	E	H	A	W	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S						S						T	T	S		T	T	S	S			S															T	S	S	S	S	S							T	T	T	T	S	S	S	T	T	S	T	T			S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	Y	L	W	S	E	I	Y	K	R	N	I	Y	L	N	A	D	K	R	D	A	V	A	R	F	F	E	S	R	S	Y	D	F	Y	S	T	K	G	I	E	A	S	Y	K	F	L	F	K	V	L	Y	N	E	E	V	E	I	E	I	E	S	G	A	G	T	E	Y	D	I	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T	S									S	S								T	T	S	S	S	S	S								T	T	S	T	T	S								S	S	S	S						B	S	S		S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	Q	S	D	S	L	T	E	D	L	V	G	Q	T	I	Y	T	A	T	G	R	C	N	V	T	Y	I	E	R	S	Y	S	N	G	K	L	Q	W	T	V	T	I	H	N	L	L	G	R	L	I	A	G	Q	E	V	K	A	E	R	L	P	S	F	E	G	E	I	I	R	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S			S			T	T	S					S	S										B				S	S	S												S		B		T	T						S	S	S									S		B
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	K	G	K	D	L	L	Q	N	N	I	D	Y	I	N	R	S	R	S	Y	Y	V	M	K	I	K	S	N	L	P	S	S	R	W	K	S	D	V	I	R	F	V	H	P	V	G	F	G	F	I	A	I	T	L	L	T	M	F	I	N	V	G	L	T	L	K	H	T	E	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S								S	S			T	T			B				S	S		S	T	T	T					T	T	T	S	S		T	T	S			B
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	I	N	K	Y	K	N	Y	K	W	D	S	G	L	P	T	E	Y	A	D	R	I	A	K	L	T	P	T	G	E	I	E	H	D	S	V	T	G	E	A	I	Y	E	P	G	P	M	A	G	V	K	Y	P	L	P	D	D	Y	N	A	E	N	N	N	S	I	F	Q	G	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				B					S							S					B		S	S	T	T	T	S	S		S		S	S	S		S	S				B			S									S	T	T			S	S			B		S	S	S	B	S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030
Sequence	P	S	E	R	R	K	L	M	S	P	L	F	D	A	S	G	T	T	F	A	Q	F	R	D	L	V	N	K	R	L	K	D	N	I	G	N	P	R	D	P	E	N	P	T	Q	V	K	I	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	S			S					S	S		S	S	S		S	S	S			B			S	S					S	S		S	S	S			S	S		S