PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5hw4C_

Fold library id	PDB Header	Molecule	Title
c5hw4C_	2.21	PDB header: transferase	Chain: C: PDB Molecule: ribosomal rna small subunit methyltransferase i;

Links to external resources
Added to library: Thu Feb 9 12:49:38 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M G Q L Y I V P T P I G N L A D I T Q R A L E V L Q A V D L I A A E D T R H T G L L L Q H F G I N A R L F A L H Q Q K A E T L L A K L Q E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S
G G G S
S S S
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q N I A L V S D A G T P L I N D P G Y H L V R T C R E A G I R V V P L P G P C A A I T A L S A A G L P S D R F C Y E G F L P A K S K G R R D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S B
T T S S S S
T T
S
S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A L K A I E A E P R T L I F Y E S T H R L L D S L E D I V A V L G E S R Y V V L A R E L T K T W E T I H G A P V G E L L A W V K E D E N R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T T
T T
S T T S T T
T
G G G G

. . . . . . . . . 220 . .

Sequence K G E M V L I V E G H K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	G	Q	L	Y	I	V	P	T	P	I	G	N	L	A	D	I	T	Q	R	A	L	E	V	L	Q	A	V	D	L	I	A	A	E	D	T	R	H	T	G	L	L	L	Q	H	F	G	I	N	A	R	L	F	A	L	H	Q	Q	K	A	E	T	L	L	A	K	L	Q	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									B		S	S		G	G	G	S											S	S					S												T	T																						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	N	I	A	L	V	S	D	A	G	T	P	L	I	N	D	P	G	Y	H	L	V	R	T	C	R	E	A	G	I	R	V	V	P	L	P	G	P	C	A	A	I	T	A	L	S	A	A	G	L	P	S	D	R	F	C	Y	E	G	F	L	P	A	K	S	K	G	R	R	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S	B		T	T	S	S	S	S											T	T																					S			S	S									S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	L	K	A	I	E	A	E	P	R	T	L	I	F	Y	E	S	T	H	R	L	L	D	S	L	E	D	I	V	A	V	L	G	E	S	R	Y	V	V	L	A	R	E	L	T	K	T	W	E	T	I	H	G	A	P	V	G	E	L	L	A	W	V	K	E	D	E	N	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T			S								T	T	T														T	T								S	T	T	S	T	T																	T		G	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.
Sequence	K	G	E	M	V	L	I	V	E	G	H	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S