PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5hsbA_

Fold library id	PDB Header	Molecule	Title
c5hsbA_	2.40	PDB header: transcription	Chain: A: PDB Molecule: rna polymerase;

Links to external resources
Added to library: Sat May 21 08:45:26 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A G P M E K Y R E I H Q R V R D L A P G T V S A L E C I D L L D R L Y A V R H D L V D Q M I K H D W S D N K D V E R P I G Q V L L M A G I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S T T S
T T T
S S S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N D I I Q G M E K K I I P N S P S G Q V L K S F F R M T P D N Y K I T G N L I E F I E V T V T A D V S R G I R E K K I A Y E G G L Q F V E H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B
T T
T T
B T T
S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . .

Sequence L L E T E S R K G N I P Q P Y K I T F S V V A V K T D G S N I S T Q W P S R R N D G V I Q H M R L V Q A D I N Y V R E H L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S S
T T
T T
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	G	P	M	E	K	Y	R	E	I	H	Q	R	V	R	D	L	A	P	G	T	V	S	A	L	E	C	I	D	L	L	D	R	L	Y	A	V	R	H	D	L	V	D	Q	M	I	K	H	D	W	S	D	N	K	D	V	E	R	P	I	G	Q	V	L	L	M	A	G	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T				S	T	T	S		T	T																								T		S	S	S	S													T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	D	I	I	Q	G	M	E	K	K	I	I	P	N	S	P	S	G	Q	V	L	K	S	F	F	R	M	T	P	D	N	Y	K	I	T	G	N	L	I	E	F	I	E	V	T	V	T	A	D	V	S	R	G	I	R	E	K	K	I	A	Y	E	G	G	L	Q	F	V	E	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T		B		T	T		T	T			B					T	T				S						T	T											S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Sequence	L	L	E	T	E	S	R	K	G	N	I	P	Q	P	Y	K	I	T	F	S	V	V	A	V	K	T	D	G	S	N	I	S	T	Q	W	P	S	R	R	N	D	G	V	I	Q	H	M	R	L	V	Q	A	D	I	N	Y	V	R	E	H	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S	S	S	S													T	T		T	T								T	T																					T