Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5hqjA_

Fold library idPDB HeaderMoleculeTitle
c5hqjA_1.55PDB header: solute-binding proteinChain: A: PDB Molecule: periplasmic binding protein/laci transcriptional regulator;


Added to library: Sat Mar 5 09:24:11 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XKDAKDISVAVIPKVAVPFFDDCNKGAKTAADKAGVKYQWVVPQNTQGSTQVQIIEDLISRHVDGIAISV
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)


GGG

SSS
TTT



SSSSSTT
S

 .........80.........90.........100.........110.........120.........130.........140
Sequence NEPKSVESVXKRAEQSGIKVLTYDSDSPKSGRSXYIGTNNEQAGATXAETXGKALNGQGEVAIITGQLGA
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) SSTGGGTTT
SS

TTS

S


TTT
S
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VNLNERIAGIKKGLAKYPGIKVVETQGTDDDLARGVSVVETTLRAHPNLKGIFGVSQVGGPAVAKVLNTR
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TT
T

TT

TT
STTTST
 .........220.........230.........240.........250.........260.........270.........280
Sequence EFGAXKGKLEVLAFDDLPDTLKGLKDGYIQGIXVQRPVTXGSLAVDHLVAQIQGQEGQPKDIDTGVTVVT
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) TTGGGTTTSS

TS



TT


S






 .........
Sequence KDNXTSYTK
Predicted secondary structure




SS confidence








Known secondary structure (DSSP) GGGTTT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D