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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5hdtA_

Fold library idPDB HeaderMoleculeTitle
c5hdtA_2.71PDB header: cell cycleChain: A: PDB Molecule: sister chromatid cohesion protein pds5 homolog b;


Added to library: Sat Mar 12 08:40:25 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XEISDKISKEEXVRRLKXVVKTFXDXDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFR
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Known secondary structure (DSSP)



SSS


SS
TST
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence IYAPEAPHTSPDKLKDIFXFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYR
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Known secondary structure (DSSP) TTS
S


GGGGG
TTSTTTGGGGGGGSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TLFSVINNGHNQKVHXHXVDLXSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAI
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Known secondary structure (DSSP)

TT

SSS


GGGS
T
 .........220.........230.........240.........250.........260.........270.........280
Sequence EPYITNFFNQVLXLGKTSISDLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKX
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Known secondary structure (DSSP) TTS


TT
TTGGG
GGGGTTTTT
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence FGAKDSELASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLXNHPDLAKDLTEYLKVRSHDPEEAIRHD
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Known secondary structure (DSSP) STT


GGGG
SS
GGGGGGTTT
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VIVSIVTAAKKDILLVNDHLLNFVRERTLDKRWRVRKEAXXGLAQIYKKYALQSAAGKDAAKQIAWIKDK
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Known secondary structure (DSSP)
GGGS
TT
SSTTS
TT
TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LLHIYYQNSIDDRLLVERIFAQYXVPHNLETTERXKCLYYLYATLDLNAVKALNEXWKCQNLLRHQVKDL
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Known secondary structure (DSSP) GGGSS
TTS
TTS
TTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LDLIKQPKTDASVKAIFSKVXVITRNLPDPGKAQDFXKKFTQVLEDDEKIRKQLEVLVSPTCSCKQAEGC
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Known secondary structure (DSSP) S


TTSS

STT

 .........570.........580.........590.........600.........610.........620.........630
Sequence VREITKKLGNPFLEXIKFLLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVPTDQAIRAGLELLKV
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Known secondary structure (DSSP) TT

S
SS
SS

STS
 .........640.........650.........660.........670.........680.........690.........700
Sequence LSFTHPISFHSAETFESLLACLKXDDEKVAEAALQIFKNTGSKIEEDFPHIRSALLPVLHHKSKKGPPRQ
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Known secondary structure (DSSP) SSGGG
STSS

TT


 .........710.........720.........730.........740.........750.........760.........770
Sequence AKYAIHCIHAIFSSKETQFAQIFEPLHKSLDPSNLEHLITPLVTIGHIALLAPDQFAAPLKSLVATFIVK
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Known secondary structure (DSSP)
TT

TT
SGGG
TTTTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence DLLXNDRLPGKKTTKLWVPDEEVSPETXVKIQAIKXXVRWLLGXKNNHSKSGTSTLRLLTTILHSDGDLT
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Known secondary structure (DSSP) TT

SS




S
S


GGGS



TTSTTT
SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence EQGKISKPDXSRLRLAAGSAIVKLAQEPCYHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRL
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Known secondary structure (DSSP)
SS
S
TSTT

GGGG
SSTT
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence PLEYXAICALCAKDPVKERRAHARQCLVKNINVRREYLKQHAAVSEKLLSLLPEYVVPYTIHLLAHDPDY
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Known secondary structure (DSSP)
GGGTGGGGGGGG
S
S


TT
GGGT
TT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VKVQDIEQLKDVKECLWFVLEILXAKNENNSHAFIRKXVENIKQTKDAQGPDDAKXNEKLYTVCDVAXNI
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Known secondary structure (DSSP)
STT
TSS

TTTTS

SSSTT
 .........1060.........1070.........1080.....
Sequence IXSKSTTYSLESPKDPVLPARFFTQPTKNYLPPEX
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Known secondary structure (DSSP)
SSSSS

SS




TTTS






S
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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