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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5hb4B_

Fold library idPDB HeaderMoleculeTitle
c5hb4B_3.20PDB header: transport proteinChain: B: PDB Molecule: nup192,nucleoporin nup192;


Added to library: Sat Apr 23 08:33:58 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IPRCMEAMKGVRSMLQCMADTLDFSRLSLVEQHECLASILHAAVQRHHATIADFQDFIKILRKWDKYDHF
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Known secondary structure (DSSP)



TTT






S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LIHLIPVLAAYITEFGSPEGMGDLQQARRLNDFICKGGDEDSWALPVLGAAVRAWWIAEHNGFYLDGINL
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Known secondary structure (DSSP) TSSSS


TS
SSS


SSTTGGG



 .........150.........160.........170.........180.........190.........200.........210
Sequence DEEDEQRTKQFLDALKEGAFDFILSVAADCKAQEWQDPSQLGARQWLQRKIPSLPSEPFPFSHFLQHSLM
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Known secondary structure (DSSP) TS

SS

GGGTTTT

S


S



S





 .........220.........230.........240.........250.........260.........270.........280
Sequence VHLEGFVDATISNLPDVLRKLRTEEDEQRQLRPNHEQDMDLERFLIIISYAYEGRPDAAMSFWEDPDSNL
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Known secondary structure (DSSP)

TTTT


TT
GGGTS
TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence AGFLQWASRRASTPLVSAFCEMLRCLADNEECATAAHNFLLDESQSLTWSQIFKELEYFTTKVCSDPAEI
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Known secondary structure (DSSP) TSS

TS
SSTT






TTTT



S

 .........360.........370.........380.........390.........400.........410.........420
Sequence EPESALMLECYLRLIAKLATESEIARKRLIMDEDFNLVDTILKLSVGVIPHRLRACIFYVLKALMIRKTH
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Known secondary structure (DSSP)

TT
TTT
TTS


SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence EELDAMWRWVEAWMTNPFTPGPQECMEMMFREFGTGFEQSNAFIQLLTTLLVPPEGLNSLNDSVPFPEWL
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Known secondary structure (DSSP)





TSSTTS
TT
SSS


S
SS
TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence GSSIRTLGIEPYVDFVFDVFANRTKDISDPSQLRILRLSCLDFVMVCLVTFNEDLIVLGHESNISIDDAM
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Known secondary structure (DSSP) TTTTT

TTTGGG


T

TTSS

SSSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence AATNLATYVRLHPFSRVMEWLFNEKVITSLINTIHQDPISLGSASPDSPLVVSILRAIQVMIKALELQET
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Known secondary structure (DSSP) SSS
STTS


TS
TTST
 .........640.........650.........660.........670.........680.........690.........700
Sequence YLHLVRPEVLRYQGEAGVRRKPVANAAYSAFEDGILSHLSLVVDLGKYCNLGHAELTLACLKLLEKISTS
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Known secondary structure (DSSP) TS






S
TT
SSTSS
TTGGGT
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence SRILSAWSPDGHRNKAIVQLERNGEGETISASLSASIMATLDPALAASGENYRVKLAILDFLYACLRATP
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Known secondary structure (DSSP) TTGGGTSS



S
SS
S


TTTTTS
SST
 .........780.........790.........800.........810.........820.........830.........840
Sequence DQPTIAHQLLGFHCELSKLGIEPKGPFDMQKSLFHSLLNVLITLTVSEEEQGMRGYLVTLKYRVLRILQL
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Known secondary structure (DSSP) TS

TT


BTTB



TTSTTTTT
STT




TTS
B
 .........850.........860.........870.........880.........890.........900.........910
Sequence LWKSPLSASLVMDELRATNFLFHMLLREVQIQPQLPWDGQLVTGCEFLLSDASLAYIDYLASRAAIFEYI
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Known secondary structure (DSSP) STT




TT

BTTB
TTSTTSTTSTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence GKELCSVSQNRIPSIKRQIFDALNGQIFVDEEAPLTIPSIFDFFDFINTDYKWEEIPSPHFTYLKDLDLG
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Known secondary structure (DSSP) TTTTTSSS
T
SSSSS



TTTS

S

TTS
GGGS



TT

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PCILEGVHYDIRKAQEILALKRKEYEHSQLATPEFLETVELEEKVLIEWLTVRNRANLLLTARLNLLQAW
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Known secondary structure (DSSP)

B



B


SS
S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ANLLLVMIESNDFKSTPKMAFLLQALQAILPTLEAFSSLKSDEAFELARVAKVLLWKLDFGLDREQFTVG
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Known secondary structure (DSSP) S


STTT
TT





 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence NLIGDKLFQLFQLCLSAISQCSGTPELRSLYYSICYRYLTAVVDTRSVTNARARTLKAITLYGDRLLNVI
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Known secondary structure (DSSP) T
S
TT


TGGG
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence CDDAYGSDTTCQTAAMILLNALVHTSRASSPADVDCPIIDALNRLNFIGVLVDSLKEILNEWLASPSQQY
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Known secondary structure (DSSP) TTSS







TTTTTT



 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence TSAKLALLLQLCQTRQGAKYVLQANLFRALEQSGVFAADSESGVPRVVALERHYALLVALARVVGAAVTA
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Known secondary structure (DSSP) STT






S
SS
 .........1340.........1350.........1360.........1370.........1380........
Sequence RGAHNIVQGRKFLTQHRGLVVHVLKKNAGRRDEILAQQALEERIEELAEAFMLLITAT
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Known secondary structure (DSSP)
TTTTTTT


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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