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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5haxA_

Fold library idPDB HeaderMoleculeTitle
c5haxA_2.10PDB header: transport proteinChain: A: PDB Molecule: nucleoporin nup170;


Added to library: Sat Apr 23 08:23:00 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DLPPVAKAAQVVNQTLQLDDSYPDLDSYCRPGASSDYEMQSSDSSWAPFHVVRHHNIPDKVFEHLNAGEV
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Known secondary structure (DSSP)


TT


S
S



TTSTT
S

T
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence FTKLGLFAEIGYAWASIDSSLFLWDYTHPNPELIGYEEATHTITAVALVPPKPGVFVKTITHVLVVATTS
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Known secondary structure (DSSP)
TTTTTTTTSSS






S



TTTS
TT

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence EIILLGVSATPTPSGSKSLTLYSTRMSVHRGGSDVSFIVGTKDGRIFLGGESDTDIHEIFYQQEERWFSS
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Known secondary structure (DSSP)

TTSS






SS



TT


SS
S


SS

SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence RCGKINHSHPFGSRQQEWLRGLYVDDTRNLLYSLSNRSTIRTYHMEGPEKLTKVIEKDKTSCLRDFAHMA
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Known secondary structure (DSSP) SSS


S


S

GGGTTT



SSS


SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence DSSPLFTDKTNIVALSPIPATEASKLHLMALTDTGCRLFLSATSSASYTSLAPQSMQLQFVKFPPRESPT
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Known secondary structure (DSSP)


TTSSTT



TTT
SSTTS

SSS














 .........360.........370.........380.........390.........400.........410.........420
Sequence RIRTLSQLDKTSRALDPSALGFRFSPGYFFDVVRKHPNQDMLFVSAPDTGRIKVTQPASALKYFEQGTWI
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Known secondary structure (DSSP) SS










TT
STTT
SSSS




SGGG



 .........430.........440.........450.........460.........470.........480.........490
Sequence ELENGNRTIEIGLTTAPFAAAKQPLGFGNELAVQFDQVPGEFAVLTNTGVHIVRRRRLVDIFAKALGNCV
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Known secondary structure (DSSP)

TT


S



SSSST
TGGGTTTS


SS

T
 .........500.........510.........520.........530.........540.........550.........560
Sequence SASDDALEREVRKFINQYGRVETIAAALAVACGQGSDLMDRNTENLARAAFIEYGGQPRLASVRLSSRHD
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Known secondary structure (DSSP) TS

TTTTTT

TS






 .........570.........580.........590.........600.........610.........620.........630
Sequence ALALYLTRLVRTLWKAKVVQVDISSTIPTSKLVTIQENVERLRNFLEANKSTIQGLAPPDIANQKEHQAL
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Known secondary structure (DSSP) TTTTTSBS


SS
TTTTTSTTTS


 .........640.........650.........660.........670.........680.........690........
Sequence HALQKLMESISEGISFVLMLFDERVSDIYARLDAVSQQQLKDLTYEQLFSQTPGKELAKVLVKAIVNR
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Known secondary structure (DSSP) S
TS
T
B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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