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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5h0sB_

Fold library idPDB HeaderMoleculeTitle
c5h0sB_3.30PDB header: transferaseChain: B: PDB Molecule: vp1;


Added to library: Thu Feb 9 19:02:40 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TKVIFNGLDVNTEVQPLSDDFKQISDPKGYLTYSVKYEDQFTKASEADDRIVGPTVNLFKYGAAVVNIDL
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Known secondary structure (DSSP)




SS



B



S




B
SS


S
STT



S
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence NRDFFDTATGIDLTKGIPLVQDLLVPIGVTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTL
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Known secondary structure (DSSP)
TTTS
GGGT
SSSS
TTSS


S
STTTTS


B
B



B


GGGS
 .........150.........160.........170.........180.........190.........200.........210
Sequence STVVNNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQAGTKYGLGLTETRLDYVRLVKTIVGHAL
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Known secondary structure (DSSP)
B
S
B
SS



GGGGTTT
S
SSSSS



B
TTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence NIDHFAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCLMLAAAN
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Known secondary structure (DSSP) SS

TTTS
SS





SSSS



 .........290.........300.........310.........320.........330.........340.........350
Sequence YPRLEGIIVQINTGYVASANVIRPVYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNV
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Known secondary structure (DSSP)
TTTTTT

B




SS
SSSGGG
S

TT
S

SB
 .........360.........370.........380.........390.........400.........410.........420
Sequence HELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFIQRGATYTINA
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Known secondary structure (DSSP)








STT




S
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence AGEFEFSGRNEKWDQSLYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQ
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Known secondary structure (DSSP) T








TSS
GGGS



SS
TT




T


SSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence TYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHL
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Known secondary structure (DSSP) S




S
SS
T

 .........570.........580.........590.........600.........610.........620.........630
Sequence SVVYATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTY
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Known secondary structure (DSSP) TSTT

S



SSTTT





SSS

SSB

S

SSSSS
GGGT
B
 .........640.........650.........660.........670.........680.........690.........700
Sequence PLVEIVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEGIRMTTYDQYLSHIRERL
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Known secondary structure (DSSP) S







TTSS





T
 .........710.........720.........730.........740.........750.........760.........770
Sequence HITNVPDPIYITGASTPDQIAASVQATHVAVVLYQSGVINGSASTYLRENEVLVVMPDYYDVVSRNNNRY
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Known secondary structure (DSSP) TT







SS

SSS




S

TT
S
STTTTT



S
 .........780.........790.........800.........810.........820.........830.........840
Sequence HESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDYGKLTLRFMQNAQIRRIRPD
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Known secondary structure (DSSP)


SSSS


SS



SST





TT
TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence GTVLRYDDQIDIEAFRWSRYFLDELRLRRLSVGLRLITNPRIARRFDGVRIMYLTDDDPDPDFVPDVPEG
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Known secondary structure (DSSP)


TTTS
GGGS

GGG

T
TTT



SS

SS





SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence YVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWV
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Known secondary structure (DSSP)



TTT
SSS

TTT


B
SSSS



S


S



 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEPSAFDPPASGEDMRLIYPLQP
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Known secondary structure (DSSP)
SSS






TTS
SS


SS




SS




S


SS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDLLYSPVANGQVGIPKLEVDHISFSNVVSMM
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Known secondary structure (DSSP)


S
S




SSSSS
SS




TTTS





SSS

B


S
SSS


BSSSSSS

S
 .........1130.........1140........
Sequence TANIRTGDDMAVERVNPDDVRAINIRNA
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Known secondary structure (DSSP)
SS


S



B




GGG


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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