PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5gukA_

Fold library id	PDB Header	Molecule	Title
c5gukA_	2.00	PDB header: biosynthetic protein	Chain: A: PDB Molecule: cyclolavandulyl diphosphate synthase;

Links to external resources
Added to library: Sat Sep 2 08:26:42 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T T L M L L P D G M R R W S E K N G V S L D D G Y A A M G D K I I E F M G W A K E E G V K T L Y I T A S S A A N H G R P E A A V N T F M E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
B T G G G G S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F T E V I R R C H S Q F K F D F S G S L D L V S E D Y L T E L S A L R D K S D S E S D F T L H Y I L G M S L S H E V V G I F N K L N G K I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S
G G G S
S
T T
S
S B
T T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E M T E E I L A E N A Y V P T Q V D Y I I R T G G A I R M S S F F P L M S P Y A E L H F S P V L F P D T T R A D F D A A L K D L R A R D R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S
S S
S
G G G
T T
T T
S
G G G
T S

. . . . . .

Sequence F G G Y P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	T	L	M	L	L	P	D	G	M	R	R	W	S	E	K	N	G	V	S	L	D	D	G	Y	A	A	M	G	D	K	I	I	E	F	M	G	W	A	K	E	E	G	V	K	T	L	Y	I	T	A	S	S	A	A	N	H	G	R	P	E	A	A	V	N	T	F	M	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T																								T	T										B	T	G	G	G	G	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	T	E	V	I	R	R	C	H	S	Q	F	K	F	D	F	S	G	S	L	D	L	V	S	E	D	Y	L	T	E	L	S	A	L	R	D	K	S	D	S	E	S	D	F	T	L	H	Y	I	L	G	M	S	L	S	H	E	V	V	G	I	F	N	K	L	N	G	K	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									G	G	G	S								G	G	G	S															S		T	T		S								S	B														T	T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	M	T	E	E	I	L	A	E	N	A	Y	V	P	T	Q	V	D	Y	I	I	R	T	G	G	A	I	R	M	S	S	F	F	P	L	M	S	P	Y	A	E	L	H	F	S	P	V	L	F	P	D	T	T	R	A	D	F	D	A	A	L	K	D	L	R	A	R	D	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S		S									S	S			S		G	G	G			T	T		T	T								S		G	G	G															T	S
	.	.	.	.	.	.
Sequence	F	G	G	Y	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S