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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5gt5A_

Fold library idPDB HeaderMoleculeTitle
c5gt5A_1.45PDB header: lyaseChain: A: PDB Molecule: pectate lyase;


Added to library: Sat Oct 28 08:28:34 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GNADYNLTGFSQGNTGGGVISESNTAVYKKVYNATDLALALKKNSGVKVVEIMNDLNLGWNEIPSAAQTS
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Known secondary structure (DSSP)
GGGG


GGGTT

TT
S

TT
TTT
SSTT




S


TTTS
GGGSST
 .........80.........90.........100.........110.........120.........130.........140
Sequence PFAKHNDALTHPVLKQTGVSKITVDGFNGLTIFSANGSKIKHAAISVKRSSNVIIRNLEFDELWEWDEST
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Known secondary structure (DSSP) T
S


S


S
SS

SS
S

B



TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence KGDYDKNDWDYITLEESSGVWIDHCVFNKAYDGLVDSKKGTSGVTISWSTFKGDDGSPNSWVTRQINEME
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Known secondary structure (DSSP) TTS

SS


SS
S


BSS
STT
S





TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence ANKASYPMYNYLRSSAVGLSKEDIIAISGSQKKGHLVGATSDESANANLSITLHHNVYKDIQDRMPRLRG
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Known secondary structure (DSSP) TTGGG
STTT


SBS




STT
GGGGG
S
SB
S
TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence GNAHAYNIIMDATDARAAQTRITSGMAAAIASKGYKFGITSNGAISTESNAVLVEKSVIKDVQYPVRNNQ
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Known secondary structure (DSSP) SS

TTS
TT


S


TT
S
S
S

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence TDPTNATYTGKIRVADTIYSLDGSSFRGSRDTAGSPLAPVPAAIKPFSWNGFSILPYSYQLDDPSTLNAR
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Known secondary structure (DSSP) S
TT
GGGB
SSTT


SSSTT
TT

BSS






SS
SS
SS





GGG
 .........430.........440....
Sequence LTASNGAGAGKLSWSKDNWLKTSY
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Known secondary structure (DSSP) TSTTSSSTT


S
GGGGG
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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