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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5gmkn_

Fold library idPDB HeaderMoleculeTitle
c5gmkn_3.40PDB header: rna binding protein/rnaChain: N: PDB Molecule: 5'-splicing site;


Added to library: Thu Feb 9 13:57:44 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FTKSELKRRRKTRKGDGPWGSWSPKKVIRNYPGHPEGTTALKFLPKTGHLILSGGNDHTIKIWDFECLRD
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B

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B

 .........80.........90.........100.........110.........120.........130.........140
Sequence FQGHNKPIKALRFTEDCQSFLSSSFDRSVKIWDTETGKVKTRLHLNSTPADVESRPTNPHEFIVGLSNSK
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SSSSB
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STTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ILHYDDVQTYDHHLSSILALKYFPDGSKFISSSEDKTVRIWENQINVPIKQISDTASMPFLNVHPNYFCA
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 .........220.........230.........240.........250.........260.........270.........280
Sequence QSMDNRIYSFSKYKRHPKKIHSSAGYGISLAFSGDGRYICSGDSKSRLFTWDWNTSRLLIPGNKPITQVD
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TTS
SSSTTT







GGG

 .........290.........
Sequence WHPSKVICSGAAGKIYVCD
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Known secondary structure (DSSP)



TTT


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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