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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5gmkd_

Fold library idPDB HeaderMoleculeTitle
c5gmkd_3.40PDB header: rna binding protein/rnaChain: D: PDB Molecule: u5 snrna;


Added to library: Thu Feb 9 12:44:22 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DILDLEELREYQRRKRTEYEGYLKRNRLDMGQWIRYAQFEIEQHDMRRARSIFERALLVDSSFIPLWIRY
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S
S

TT

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence IDAELKVKCINHARNLMNRAISTLPRVDKLWYKYLIVEESLNNVEIVRSLYTKWCSLEPGVNAWNSFVDF
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Known secondary structure (DSSP) TT

SS
TTT
T


 .........150.........160.........170.........180.........190.........200.........210
Sequence EIRQKNWNGVREIYSKYVMAHPQMQTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQNLQIWSDMEVAK
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Known secondary structure (DSSP) S

S
ST
GGG

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence LVNSFAHWEAAQQEYERSSALYQIAIEKWPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) TT





S


SS

 .........290.........300.........310.........320.........330.........340.........350
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) T

TTTTT





TTSSS




 .........360.........370.........380.........390.........400.........410.........420
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)

TT


TTS



S


S
 .........430.........440.........450.........460.........470.........480.........490
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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TT





TS




 .........500.........510.........520.........530.........540.........
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)


TTSS



T




Download:PDB structure FASTA sequence

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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