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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5gmkc_

Fold library idPDB HeaderMoleculeTitle
c5gmkc_3.40PDB header: rna binding protein/rnaChain: C: PDB Molecule: pre-mrna-splicing factor snu114;


Added to library: Thu Feb 9 18:28:44 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KGGVWTNVEDQILKAAVQKYGTHQWSKVASLLQKKTARQSELRWNEYLNPKLNFTEFSKEEDAQLLDLAR
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Known secondary structure (DSSP)






STTGGGSTT

TT
TTS





 .........80.........90.........100.........110.........120.........130.........140
Sequence ELPNQWRTIADMMARPAQVCVERYNRLLESEDSEDEEKEMLAEARARLLNTQGKKATRKIRERMLEESKR
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Known secondary structure (DSSP) SSS
TTTS
TTS


T



 .........150.........160.........170.........180.........190.........200.........210
Sequence IAELQKRRELKQAGINVAIKKPKKKYGTDIDYNEDIVYEQAPMPGIYDTSTEDRQIKKKFEQFERKVNRK
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Known secondary structure (DSSP) TT









SSTT


TTTS
SS






TT


STTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence GLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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SSSTT












 .........290.........300.........310.........320.........330.........340.........350
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESRMQHITQGRTSMKIQFKT
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Known secondary structure (DSSP)



S






 .........360.........370.........380.........390.........400.........410.........420
Sequence AMPPTEVLLESIQSKVESIEQLQRKLQHVQPLEQQNNEMCSTLCHHSLPALIEGQRKYYADYYAYRQEIR
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Known secondary structure (DSSP)
 .........430......
Sequence SLEGRRKRLQAMLNSS
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Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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