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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5gjqP_

Fold library idPDB HeaderMoleculeTitle
c5gjqP_4.50PDB header: hydrolaseChain: P: PDB Molecule: 26s proteasome non-atpase regulatory subunit 12;


Added to library: Thu Feb 9 11:47:36 2017
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence GSERADGRIVKMEVDYSATVLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIML
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Known secondary structure (DSSP)


TTTTTT
ST


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LSKRRQAVAKMVQQCCTYVDLPIKLRLIDTLRMVTEIERARLTKTLATIKEQNGDVKEAASILQELQVET
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Known secondary structure (DSSP) T

S




SSTTTTTTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence YGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSI
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Known secondary structure (DSSP) TTTS
T

T

GGGGGST

 .........220.........230.........240.........250.........260.........270.........280
Sequence CKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTME
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Known secondary structure (DSSP) T

S
S

SGGGT

S
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence LMRWSTLVEDYGMELRKGSFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEA
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Known secondary structure (DSSP)






SSTTTS
SSTSS
 .........360.........370.........380.........390.........400.........410...
Sequence FLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHN
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Known secondary structure (DSSP) S




TTTT








Download:PDB structure FASTA sequence

Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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