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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ganA_

Fold library idPDB HeaderMoleculeTitle
c5ganA_3.60PDB header: transcriptionChain: A: PDB Molecule: pre-mrna-splicing factor 8;


Added to library: Sat Jan 30 08:39:48 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KSRKRAKKMTKKAKRSNLYTPKAEMPPEHLRKIINTHSDMANTDKKAFLGALKYLPHAILKLLENMPHPW
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Known secondary structure (DSSP)
S















TTT


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence EQAKEVKVLYHTSGAITFVNETPRVIEPVYTAQWSATWIAMRREKRDRTHFKRMRFPPFDDDEPPLSYEQ
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Known secondary structure (DSSP)
S


TTS
S




B

SS




SS
S
SSS



S
 .........150.........160.........170.........180.........190.........200.........210
Sequence HIENIEPLDPINLPLDSQDDEYVKDWLYDSRPLEEDSKKVNGTSYKKWSFDLPEMSNLYRLSTPLRDEVT
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Known secondary structure (DSSP) T
S




S




TTTSTTTTTTSS
SS
SS
SSTTBS
TT



TTT




 .........220.........230.........240.........250.........260.........270.........280
Sequence DKNYYYLFDKKSFFNGKALNNAIPGGPKFEPLYPREEEEDYNEFNSIDRVIFRVPIRSEYKVAFPHLYNS
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Known secondary structure (DSSP)
GGGGTTTST


SSS




SS








SSS
TTTS


S


STTTSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence RPRSVRIPWYNNPVSCIIQNDEEYDTPALFFDPSLAPLLAEEEELILPNTKDAMSLYHSPFPFNRTKGKM
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Known secondary structure (DSSP) S
SS















SS

S


SS






SSSSS

S

STS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence VRAQDVALAKKWFLQHPDEEYPVKVKVSYQKLLKNYVLNELHPTLPTNHNKTKLLKSLKNTKYFQQTTID
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Known secondary structure (DSSP) B
SSSS
SS


SSS
S








T
TT


 .........430.........440.........450.........460.........470.........480.........490
Sequence WVEAGLQLCRQGHNMLNLLIHRKGLTYLHLDYNFNLKPTKTLTTKERKKSRLGNSFHLMRELLKMMKLIV
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Known secondary structure (DSSP) SS

S
B

TT


B

S


T


 .........500.........510.........520.........530.........540.........550.........560
Sequence DTHVQFRLGNVDAFQLADGIHYILNHIGQLTGIYRYKYKVMHQIRACKDLKHIIYYKFNKNLGKGPGCGF
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Known secondary structure (DSSP) SSS

T

STTT
TTTSS

SS



 .........570.........580.........590.........600.........610.........620.........630
Sequence WQPAWRVWLNFLRGTIPLLERYIGNLITRQFEDAYYDLELRNSVMDDILEMMPESIRQKKARTILQHLSE
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Known secondary structure (DSSP)

SS


TT


TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence AWRCWKANIPWDVPGMPAPIKKIIERYIKSKADAWVSAAHYNRERIKRGAHVEKTMVKKNLGRLTRLWIK
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Known secondary structure (DSSP) T




SSS
T



TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence NEQERQRQIQKNGPEITPEEATTIFSVMVEWLESRSFSPIPFPPLTYKNDTKILVLALEDLKDVYASKVR
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Known secondary structure (DSSP)

SS
T


B



TT
TT
SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence LNASEREELALIEEAYDNPHDTLNRIKKYLLTQRVFKPVDITMMENYQNISPVYSVDPLEKITDAYLDQY
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Known secondary structure (DSSP)

SS











TTS




B

 .........850.........860.........870.........880.........890.........900.........910
Sequence LWYEADQRKLFPNWIKPSDSEIPPLLVYKWTQGINNLSEIWDVSRGQSAVLLETTLGEMAEKIDFTLLNR
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Known secondary structure (DSSP) T
S
TTS
SS

TSTTSS

TT





BTTGGG

 .........920.........930.........940.........950.........960.........970.........980
Sequence LLRLIVDPNIADYITAKNNVVINFKDMSHVNKYGLIRGLKFASFIFQYYGLVIDLLLLGQERATDLAGPA
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Known secondary structure (DSSP) TTB
S

TT


SSS

TTSTT

S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence NNPNEFMQFKSKEVEKAHPIRLYTRYLDRIYMLFHFEEDEGEELTDEYLAENPDPNFENSIGYNNRKCWP
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Known secondary structure (DSSP) SS


TT

S
TSSSTT
TS

SS
TTSTT



TTS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KDSRMRLIRQDVNLGRAVFWEIQSRVPTSLTSIKWENAFVSVYSKNNPNLLFSMCGFEVRILPRQRMEEV
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Known secondary structure (DSSP) GGGS



S
TTT
B

TTT
B

SSS




TTGGG

SS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence VSNDEGVWDLVDERTKQRTAKAYLKVSEEEIKKFDSRIRGILMASGSTTFTKVAAKWNTSLISLFTYFRE
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Known secondary structure (DSSP)



SS
TTT
S
TTTTTS
T
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence AIVATEPLLDILVKGETRIQNRVKLGLNSKMPTRFPPAVFYTPKELGGLGMISASHILIPASDLSWSKQT
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Known secondary structure (DSSP)

SS

S


SS
GGGTS





S

B

SGGG

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence DTGITHFRADEKLIPTIFRYITTWENEFLDSQRVWAEYATKRQEAIQQNRRLAFEELEGSWDRGIPRIST
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Known secondary structure (DSSP) SS





B


GGGTS

TT



TTTTTTSSS
TTTT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LFQRDRHTLAYDRGHRIRREFKQYSLERNSPFWWTNSHHDGKLWNLNAYRTDVIQALGGIETILEHTLFK
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Known secondary structure (DSSP) T
TTTS

SGGGGTSSS

TT
S







TTSGGG
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence GTGFNSWEGLFWEKASGFEDSMQFKKLTHAQRTGLSQIPNRRFTLWWSPTINRANVYVGFLVQLDLTGIF
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Known secondary structure (DSSP) GG

S
STT

SSS


TTGGGSSSTTTS
S


TTTT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence LHGKIPTLKISLIQIFRAHLWQKIHESIVFDICQILDGELDVLQIESVTKETVHPRKSYKMNSSAADITM
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Known secondary structure (DSSP)
SS

TTTTTSGGGT



GGGGT
SS

B
S
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence ESVHEWEVSKPSLLHETNDSFKGLITNKMWFDVQLRYGDYDSHDISRYVRAKFLDYTTDNVSMYPSPTGV
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Known secondary structure (DSSP)



SSS
S


S
S




GGGG
SSSSB
SSS

 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence MIGIDLAYNMYDAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSSNYAEL
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Known secondary structure (DSSP) TTTT


TT
T
S
SS

B
SGGGGGG
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence FNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKT
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Known secondary structure (DSSP) GSSS

TTSS


B


SS



B



TTTT
GGGGTT

S
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence AEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATE
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Known secondary structure (DSSP) S
TTT

SSSGGGTTSS
TT

BS


GGGGGTTST
SS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence PQMVLFNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIES
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Known secondary structure (DSSP)



SS
S
TTTS

TS
SSS


TT
SS



 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence QMRDLILTEYGRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAASSKNEWRKSAIANTLLYLR
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Known secondary structure (DSSP) T

S


T



S




GGGGGGG
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence LKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGS
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Known secondary structure (DSSP) GS







SSS
S
SSB


SS
TT


BT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence VQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAY
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Known secondary structure (DSSP)





SSSSS
SS
SS

SS

TSSS
SS
TT
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence NLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFK
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Known secondary structure (DSSP)




SS
STTTT




SS


TTS

B
SS
TTT

TT



 .........2180.........2190......
Sequence YGIPLEFYNEMHRPVHFLQFSELAGD
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Known secondary structure (DSSP)




TT
TTT
S
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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