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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5g0iB_

Fold library idPDB HeaderMoleculeTitle
c5g0iB_1.99PDB header: cell cycleChain: B: PDB Molecule: hdac6;


Added to library: Sat Jul 30 14:38:16 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KATGTGLVYVDAFTRFHCLWDASHPECPARVSTVMEMLETEGLLGRCVQVEARAVTEDELLLVHTKEYVE
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Known secondary structure (DSSP)





GGGGS


SS
TT
SS
TTT
GGGS





TTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LMKSTQNMTEEELKTLAEKYDSVYLHPGFFSSACLSVGSVLQLVDKVMTSQLRNGFSINRPPGHHAQADK
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Known secondary structure (DSSP) GGG

TTSBS



TTTTS
S

SS

TT
BTTB
 .........150.........160.........170.........180.........190.........200.........210
Sequence MNGFCMFNNLAIAARYAQKRHRVQRVLIVDWDVHHGQGIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESD
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Known secondary structure (DSSP)
BTTBSS
S

S

SSS

TT
TT
GGGTSTT

GGGS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SSSVGSGAGQGYNINLPWNKVGMESGDYITAFQQLLLPVAYEFQPQLVLVAAGFDAVIGDPKGGMQVSPE
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Known secondary structure (DSSP) TT



GGGTT

SS


T

S

TTBTT
TTT


B
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence CFSILTHMLKGVAQGRLVLALEGGYNLQSTAEGVCASMRSLLGDPCPHLPSSGAPCESALKSISKTISDL
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Known secondary structure (DSSP) TGGGG




ST






S
SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence YPFWKSLQTFPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELAL
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Known secondary structure (DSSP) GGG
GGGGG



GGGGG


SS
TT
SS
TTT
GGGS






TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence CHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPP
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Known secondary structure (DSSP) TS
GGG

TSSS



TTTTS
S
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence GHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGA
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Known secondary structure (DSSP)
TT
BTTB
BTTBSS
TS
TT


SSS

TT
SS
GGGT
 .........570.........580.........590.........600.........610.........620.........630
Sequence FFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDP
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Known secondary structure (DSSP) STT

GGGSTT


SGGGTTS
SS

BT

S

TTBTT
T
 .........640.........650.........660.........670.........680.........690.........700
Sequence LGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATV
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Known secondary structure (DSSP) TT

BB
TTSGGG





TT












 .........710.........720
Sequence SINNVLRAHAPFWSSLRVNI
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Known secondary structure (DSSP) TTT
GGG




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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