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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5fvmD_

Fold library idPDB HeaderMoleculeTitle
c5fvmD_6.70PDB header: transferaseChain: D: PDB Molecule: target of rapamycin complex subunit lst8;


Added to library: Sat Apr 23 09:21:12 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VILASAGYDHTIRFWEALTGVCSRTIQHADSQVNRLEITSDKKYLAAAGHLHVRLYDIRSNNPNPVSSFE
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Known secondary structure (DSSP)

BTTS
TTT

B
S


SS

SS
B

SSS

SSSSSSSS
S
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence GHKGNVTSIAFQQENRWMVSSSEDGTIKVWDVRSPSVQRNYKHNAPVNEVAIHPNQGELISCDQDGNIRI
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Known secondary structure (DSSP)
SSS

SSSSSTTS



SSSS





SSS






SSTT



SSSSB
 .........150.........160.........170.........180.........190.........200.........210
Sequence WDLGENQCTNQLTPEDNTPLQSLSVASDGSMLVAGNNKGNCYVWRMPHHTDASTLEPVTKFKSHTKYITR
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Known secondary structure (DSSP)

SSSS




B
S
SSS


S
SS

SSS

SSSS



SS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence VLLSADVKNLATCSADHTARVWNIEDNYQLETTLDGHQRWVWDCAFSADSAYLVTACSDHYVRLWDLSTS
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Known secondary structure (DSSP)
SSSSSTTS
SSSTT

SS


S

B
SS
SSSBB


TTSSB
SSS
 .........290.........
Sequence EIVRQYGGHHKGAVCVALN
Predicted secondary structure





SS confidence


















Known secondary structure (DSSP)


S
SS
B






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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