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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5fqdA_

Fold library idPDB HeaderMoleculeTitle
c5fqdA_2.45PDB header: ligaseChain: A: PDB Molecule: dna damage-binding protein 1;


Added to library: Sat Feb 27 08:21:23 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPK
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SS
SS

TT
SSS
SS


T
 .........80.........90.........100.........110.........120.........130.........140
Sequence GESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLF
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Known secondary structure (DSSP) T
SS
TT
TT


SS

B
TT


TTSS
BTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence KVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQE
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Known secondary structure (DSSP)

TT
TT



S


SS
SS
TTTTTT
SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence NVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRL
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Known secondary structure (DSSP)

TT



TTT
S
SS
SSS


GGGTTS

STTSSTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence FMLLLEKVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLG
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Known secondary structure (DSSP)





S
TTSSS


S
TTS






 .........360.........370.........380.........390.........400.........410.........420
Sequence PIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEV
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Known secondary structure (DSSP) S

SSSSS


GGG



SSTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence QDTSGGTTALRPSASTQALSSSVSSSKLFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGK
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Known secondary structure (DSSP)
SSSSSS

TTTS
S







TTT



TT

TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence DPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEW
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Known secondary structure (DSSP)





TT
SS


TTSS
TTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence TTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD
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Known secondary structure (DSSP)
TTS

SS


TT
TT
TTTT

S

SSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQSTPTQGSVLFGTVNGMIG
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Known secondary structure (DSSP) TTT

TT
SSTTGGGB

SS


SS



S
TTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEV
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Known secondary structure (DSSP)

S

TTS

S
SS


BSGGGGS
 .........780.........
Sequence VANTADDLIKVVEELTRIH
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Known secondary structure (DSSP) T


TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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