PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5fmgD_

Fold library id	PDB Header	Molecule	Title
c5fmgD_	3.60	PDB header: hydrolase	Chain: D: PDB Molecule: proteasome subunit alpha type;

Links to external resources
Added to library: Sat Mar 5 08:31:24 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T V F S P D G H L L Q V E H A L E A V K K G G C A V A I K S S N F A V L A V E K K N I P K L Q N P K T T E K L I K L D E H N C L A F A G L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T
B T S
S S
-
T T S S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A D A R V L V N K T R L E C Q R Y Y L N M D E P A P V D Y I A K Y V A K V Q Q K F T H R G G V R P F G I A T L I A G F E I C I Y Q T E P S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S S S S
-
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I Y A A W K A Q A I G K N A K I V Q E F L E K N Y Q E N M E Q K D C I F L A L K A I N V E V A L L T E K D L T F I E E Q E I N S M V E L I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T S S
S S
T T
-
T T
T G G G

. . . . .

Sequence Q E R T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
-

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	V	F	S	P	D	G	H	L	L	Q	V	E	H	A	L	E	A	V	K	K	G	G	C	A	V	A	I	K	S	S	N	F	A	V	L	A	V	E	K	K	N	I	P	K	L	Q	N	P	K	T	T	E	K	L	I	K	L	D	E	H	N	C	L	A	F	A	G	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B		T	T			B												T	S									S	S														-			T	T	S	S	S	S						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	D	A	R	V	L	V	N	K	T	R	L	E	C	Q	R	Y	Y	L	N	M	D	E	P	A	P	V	D	Y	I	A	K	Y	V	A	K	V	Q	Q	K	F	T	H	R	G	G	V	R	P	F	G	I	A	T	L	I	A	G	F	E	I	C	I	Y	Q	T	E	P	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S	S	S																					S	S	S	S											-										T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	Y	A	A	W	K	A	Q	A	I	G	K	N	A	K	I	V	Q	E	F	L	E	K	N	Y	Q	E	N	M	E	Q	K	D	C	I	F	L	A	L	K	A	I	N	V	E	V	A	L	L	T	E	K	D	L	T	F	I	E	E	Q	E	I	N	S	M	V	E	L	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S					S	T	T										S	S			S	S			T	T										-									T	T							T	G	G	G
	.	.	.	.	.
Sequence	Q	E	R	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					-