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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5fmf1_

Fold library idPDB HeaderMoleculeTitle
c5fmf1_PDB header: transcriptionChain: 1: PDB Molecule: dna repair helicase rad25, ssl2;PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex


Added to library: Sat Nov 28 08:51:16 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SAVIGGDNEREEEDDDIDAVHSFEIANESVEVVKKRCQEIDYPVLEEYDFRNDHRNPDLDIDLKPSTQIR
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Known secondary structure (DSSP)

TTS
TTTS
TTTTGGGGGGGT


S















 .........80.........90.........100.........110.........120.........130.........140
Sequence PYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPE
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Known secondary structure (DSSP) TTSSSSS

GGG

S
SSGGGTS
SSST
 .........150.........160.........170.........180.........190.........200.........210
Sequence NCAVFTSDNKEMFQTESGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVS
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Known secondary structure (DSSP) T
BSSS
B



TTTTSS

SSSS
STTTS
SSSSSSS
STGGGTTSTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence TIAAHAKLGLTATLVREDDKIGDLNFLIGPKLYEAIANVQCAEVWCPMTAEFYQEYLRETARKRMLLYIM
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Known secondary structure (DSSP) T



S



TT
GGGGT










SGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence NPTKFQACQFLIQYHERRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIF
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Known secondary structure (DSSP)
TTT


S
TT


TTS

TT

 .........360.........370.........380.........390.........400.........410.........420
Sequence LSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRRNDEGFNAFFYSLVSKDTQEMYYSTKRQ
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Known secondary structure (DSSP)
GGGTTTS



BSS


SS
B





SSS
STTSGGG
 .........430.........440.........450.........460.........470...
Sequence AFLVDQGYAFKVITHLHGMENPNLAYASPRERRELLQEVLAGIEVDADNSVGR
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Known secondary structure (DSSP) TT
SS
TTTTSS

S

SS
GGGGS





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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