PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5flmA_

Fold library id	PDB Header	Molecule	Title
c5flmA_	3.40	PDB header: transcription	Chain: A: PDB Molecule: dna-directed rna polymerase;

Links to external resources
Added to library: Sat Jan 23 08:54:12 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S A C P L R T I K R V Q F G V L S P D E L K R M S V T E G G I K Y P E T T E G G R P K L G G L M D P R Q G V I E R T G R C Q T C A G N M T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S S
B
S B S S S S B
T T B S S
T T T S
T T T
T T S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C P G H F G H I E L A K P V F H V G F L V K T M K V L R C V C F F C S K L L V D S N N P K I K D I L A K S K G Q P K K R L T H V Y D L C K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T B
T T T
S B S S
T T
S T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K N I C E H G G C G R Y Q P R I R R S G L E L Y A E W K K I L L S P E R V H E I F K R I S D E E C F V L G M E P R Y A R P E W M I V T V L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B
S B
T T
S
T T
T T T
G G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V P P L S V R P A V V M Q G S A R N Q D D L T H K L A D I V K I N N Q L R R N E Q N G A A A H V I A E D V K L L Q F H V A T M V D N E L P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
T T T
T T S
S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L P R A M Q K S G R P L K S L K Q R L K G K E G R V R G N L M G K R V D F S A R T V I T P D P N L S I D Q V G V P R S I A A N M T F A E I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S S T T S T T S
S S
T T S
S S
T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence T P F N I D R L Q E L V R R G N S Q Y P G A K Y I I R D N G D R I D L R F H P K P S D L H L Q T G Y K V E R H M C D G D I V I F N R Q P T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T S S S S
T T
S S S S
G G G
T T
T T
S S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence H K M S M M G H R V R I L P W S T F R L N L S V T T P Y N A D F D G D E M N L H L P Q S L E T R A E I Q E L A M V P R M I V T P Q S N R P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G
S S S
G G G T
S S S
S T T B T G G G S B
T T T S S B S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence M G I V Q D T L T A V R K F T K R D V F L E R G E V M N L L M F L S T W D G K V P Q P A I L K P R P L W T G K Q I F S L I I P G H I N C I R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S T T
T
S S
S
S B
S S S
B S
S S
B

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence T H S T H P D D E D S G P Y K H I S P G D T K V V V E N G E L I M G I L C K K S L G T S A G S L V H I S Y L E M G H D I T R L F Y S N I Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S T T T S S
T T T
T T S
S T T
T T T T S S S T T
T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence V I N N W L L I E G H T I G I G D S I A D S K T Y Q D I Q N T I K K A K Q D V I E V I E K A H N N E L E P T P G N T L R Q T F E N Q V N R I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence L N D A R D K T G S S A Q K S L S E Y N N F K S M V V S G A K G S K I N I S Q V I A V V G Q Q N V E G K R I P F G F K H R T L P H F I K D D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T T S S
T
T T
S S S S S S S S S S
S S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence Y G P E S R G F V E N S Y L A G L T P T E F F F H A M G G R E G L I D T A V K T A E T G Y I Q R R L I K S M E S V M V K Y D A T V R N S I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T T
S
T T T
T T
T T S
T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence Q V V Q L R Y G E D G L A G E S V E F Q N L A T L K P S N K A F E K K F R F D Y T N E R A L R R T L Q E D L V K D V L S N A H I Q N E L E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G T T B
S S S
S S S S S
S
S S S B

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence E F E R M R E D R E V L R V I F P T G D S K V V L P C N L L R M I W N A Q K I F H I N P R L P S D L H P I K V V E G V K E L S K K L V I V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S
T T
T T S
B
T S
S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence G D D P L S R Q A Q E N A T L L F N I H L R S T L C S R R M A E E F R L S G E A F D W L L G E I E S K F N Q A I A H P G E M V G A L A A Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T
T T
B
T T
B

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence L G E P A T Q M T L N T F H K N V T L G V P R L K E L I N I S K K P K T P S L T V F L L G Q S A R D A E R A K D I L C R L E H T T L R K V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G G T T T T
S T
S S
S S
B
S S S S
B
T T T T

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence A N T A I Y Y D P N P Q S T V V A E D Q E W V N V Y Y E M P D F D V A R I S P W L L R V E L D R K H M T D R K L T M E Q I A E K I N A G F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T
S S S T S
S
S S
S
T T
G

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence D D L N C I F N D D N A E K L V L R I R I M N S D E N K M D D D V F L R C I E S N M L T D M T L Q G I E Q I S K V Y M H L P Q T D N K K K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G
T T S S S
T T
B S
T T
S T T T S

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence I I T E D G E F K A L Q E W I L E T D G V S L M R V L S E K D V D P V R T T S N D I V E I F T V L G I E A V R K A L E R E L Y H V I S F D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
S T T B
T T T
S
S
S S

. . . . . . . . . 1340 . . . . . . . . . 1350 . . . . . . . . . 1360 . . . . . . . . . 1370 . . . . . . . . . 1380 . . . . . . . . . 1390 . . . . . . . . . 1400

Sequence S Y V N Y R H L A L L C D T M T C R G H L M A I T R H G V N R Q D T G P L M K C S F E E T V D V L M E A A A H G E S D P M K G V S E N I M L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
S S S
T T T T T T T
S T

. . . . . . . . . 1410 . . . . . . . . . 1420 . . . . . . .

Sequence G Q L A P A G T G C F D L L L D A E K C K Y G M E I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S S T T T S S
T T G G G
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	A	C	P	L	R	T	I	K	R	V	Q	F	G	V	L	S	P	D	E	L	K	R	M	S	V	T	E	G	G	I	K	Y	P	E	T	T	E	G	G	R	P	K	L	G	G	L	M	D	P	R	Q	G	V	I	E	R	T	G	R	C	Q	T	C	A	G	N	M	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																							S	S	S	S				B			S	B	S	S	S	S	B		T	T	B	S	S		T	T	T	S			T	T	T				T	T	S			T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	P	G	H	F	G	H	I	E	L	A	K	P	V	F	H	V	G	F	L	V	K	T	M	K	V	L	R	C	V	C	F	F	C	S	K	L	L	V	D	S	N	N	P	K	I	K	D	I	L	A	K	S	K	G	Q	P	K	K	R	L	T	H	V	Y	D	L	C	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T	T											B		T	T	T		S	B	S	S		T	T											S	T	T														T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	N	I	C	E	H	G	G	C	G	R	Y	Q	P	R	I	R	R	S	G	L	E	L	Y	A	E	W	K	K	I	L	L	S	P	E	R	V	H	E	I	F	K	R	I	S	D	E	E	C	F	V	L	G	M	E	P	R	Y	A	R	P	E	W	M	I	V	T	V	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	B								S	B								T	T																						S									T	T			T	T	T			G	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	P	P	L	S	V	R	P	A	V	V	M	Q	G	S	A	R	N	Q	D	D	L	T	H	K	L	A	D	I	V	K	I	N	N	Q	L	R	R	N	E	Q	N	G	A	A	A	H	V	I	A	E	D	V	K	L	L	Q	F	H	V	A	T	M	V	D	N	E	L	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T	S						T	T	T																													T	T	S																				S			T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	P	R	A	M	Q	K	S	G	R	P	L	K	S	L	K	Q	R	L	K	G	K	E	G	R	V	R	G	N	L	M	G	K	R	V	D	F	S	A	R	T	V	I	T	P	D	P	N	L	S	I	D	Q	V	G	V	P	R	S	I	A	A	N	M	T	F	A	E	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S							T	T											S	S	T	T	S						T	T	S				S	S										T	T	S		S	S						T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	T	P	F	N	I	D	R	L	Q	E	L	V	R	R	G	N	S	Q	Y	P	G	A	K	Y	I	I	R	D	N	G	D	R	I	D	L	R	F	H	P	K	P	S	D	L	H	L	Q	T	G	Y	K	V	E	R	H	M	C	D	G	D	I	V	I	F	N	R	Q	P	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T											T	T	T	S	S	S	S							T	T						S	S	S	S				G	G	G				T	T									T	T								S	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	H	K	M	S	M	M	G	H	R	V	R	I	L	P	W	S	T	F	R	L	N	L	S	V	T	T	P	Y	N	A	D	F	D	G	D	E	M	N	L	H	L	P	Q	S	L	E	T	R	A	E	I	Q	E	L	A	M	V	P	R	M	I	V	T	P	Q	S	N	R	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	G	G	G										S	S	S						G	G	G					T			S	S	S										S										T	T	B	T	G	G	G	S	B		T	T	T	S	S	B	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	M	G	I	V	Q	D	T	L	T	A	V	R	K	F	T	K	R	D	V	F	L	E	R	G	E	V	M	N	L	L	M	F	L	S	T	W	D	G	K	V	P	Q	P	A	I	L	K	P	R	P	L	W	T	G	K	Q	I	F	S	L	I	I	P	G	H	I	N	C	I	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T											S	T	T														T		S	S			S						S	B		S	S	S		B											S		S	S			B
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	T	H	S	T	H	P	D	D	E	D	S	G	P	Y	K	H	I	S	P	G	D	T	K	V	V	V	E	N	G	E	L	I	M	G	I	L	C	K	K	S	L	G	T	S	A	G	S	L	V	H	I	S	Y	L	E	M	G	H	D	I	T	R	L	F	Y	S	N	I	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T			S	S	T	T	T	S	S		T	T	T		T	T	S		S					T	T									T	T	T	T	S	S	S	T	T										T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	V	I	N	N	W	L	L	I	E	G	H	T	I	G	I	G	D	S	I	A	D	S	K	T	Y	Q	D	I	Q	N	T	I	K	K	A	K	Q	D	V	I	E	V	I	E	K	A	H	N	N	E	L	E	P	T	P	G	N	T	L	R	Q	T	F	E	N	Q	V	N	R	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																T	T						T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	L	N	D	A	R	D	K	T	G	S	S	A	Q	K	S	L	S	E	Y	N	N	F	K	S	M	V	V	S	G	A	K	G	S	K	I	N	I	S	Q	V	I	A	V	V	G	Q	Q	N	V	E	G	K	R	I	P	F	G	F	K	H	R	T	L	P	H	F	I	K	D	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S			T	T									T	T	S	S											T								T	T						S	S	S	S	S	S	S	S	S	S		S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	Y	G	P	E	S	R	G	F	V	E	N	S	Y	L	A	G	L	T	P	T	E	F	F	F	H	A	M	G	G	R	E	G	L	I	D	T	A	V	K	T	A	E	T	G	Y	I	Q	R	R	L	I	K	S	M	E	S	V	M	V	K	Y	D	A	T	V	R	N	S	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	T	T	T	T	T				S		T	T	T																																								T	T					T	T	S					T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	Q	V	V	Q	L	R	Y	G	E	D	G	L	A	G	E	S	V	E	F	Q	N	L	A	T	L	K	P	S	N	K	A	F	E	K	K	F	R	F	D	Y	T	N	E	R	A	L	R	R	T	L	Q	E	D	L	V	K	D	V	L	S	N	A	H	I	Q	N	E	L	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	G	G	G	T	T	B		S	S	S							S	S	S	S	S										S				S	S	S							B
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	E	F	E	R	M	R	E	D	R	E	V	L	R	V	I	F	P	T	G	D	S	K	V	V	L	P	C	N	L	L	R	M	I	W	N	A	Q	K	I	F	H	I	N	P	R	L	P	S	D	L	H	P	I	K	V	V	E	G	V	K	E	L	S	K	K	L	V	I	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	G	G	G							S	S													T	T			T	T	S		B																T	S			S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	G	D	D	P	L	S	R	Q	A	Q	E	N	A	T	L	L	F	N	I	H	L	R	S	T	L	C	S	R	R	M	A	E	E	F	R	L	S	G	E	A	F	D	W	L	L	G	E	I	E	S	K	F	N	Q	A	I	A	H	P	G	E	M	V	G	A	L	A	A	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S																						T								T	T																						B			T	T		B
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	L	G	E	P	A	T	Q	M	T	L	N	T	F	H	K	N	V	T	L	G	V	P	R	L	K	E	L	I	N	I	S	K	K	P	K	T	P	S	L	T	V	F	L	L	G	Q	S	A	R	D	A	E	R	A	K	D	I	L	C	R	L	E	H	T	T	L	R	K	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	G	G	G	G	T	T	T	T									S										T		S	S		S	S							B		S					S											S	S		B		T	T	T	T
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	A	N	T	A	I	Y	Y	D	P	N	P	Q	S	T	V	V	A	E	D	Q	E	W	V	N	V	Y	Y	E	M	P	D	F	D	V	A	R	I	S	P	W	L	L	R	V	E	L	D	R	K	H	M	T	D	R	K	L	T	M	E	Q	I	A	E	K	I	N	A	G	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S	T	T	T			S	S	S	T										S			S		S	S				S															T	T															G
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	D	D	L	N	C	I	F	N	D	D	N	A	E	K	L	V	L	R	I	R	I	M	N	S	D	E	N	K	M	D	D	D	V	F	L	R	C	I	E	S	N	M	L	T	D	M	T	L	Q	G	I	E	Q	I	S	K	V	Y	M	H	L	P	Q	T	D	N	K	K	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G								T	T	S	S	S																T	T																		B	S		T	T											S	T	T	T	S
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	I	I	T	E	D	G	E	F	K	A	L	Q	E	W	I	L	E	T	D	G	V	S	L	M	R	V	L	S	E	K	D	V	D	P	V	R	T	T	S	N	D	I	V	E	I	F	T	V	L	G	I	E	A	V	R	K	A	L	E	R	E	L	Y	H	V	I	S	F	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S														S									S	T	T	B		T	T	T				S		S																											S	S
	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400
Sequence	S	Y	V	N	Y	R	H	L	A	L	L	C	D	T	M	T	C	R	G	H	L	M	A	I	T	R	H	G	V	N	R	Q	D	T	G	P	L	M	K	C	S	F	E	E	T	V	D	V	L	M	E	A	A	A	H	G	E	S	D	P	M	K	G	V	S	E	N	I	M	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T	S	S				S	S							S									T	T	T	T	T										T	T							S							T
	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.
Sequence	G	Q	L	A	P	A	G	T	G	C	F	D	L	L	L	D	A	E	K	C	K	Y	G	M	E	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S			S	S	T	T	T	S	S						T	T	G	G	G		S