PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5fkvD_

Fold library id	PDB Header	Molecule	Title
c5fkvD_	PDB header: transferase	Chain: D: PDB Molecule: dna polymerase iii epsilon;	PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)

Links to external resources
Added to library: Sat Nov 28 08:28:32 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R Q I V L D T E T T G M N Q I G A H Y E G H K I I E I G A V E V V N R R L T G N N F H V Y L K P D R L V D P E A F G V H G I A D E F L L D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
T T T T
T T
S
S S
G G G S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P T F A E V A D E F M D Y I R G A E L V I H N A A F D I G F M D Y E F S L L K R D I P K T N T F C K V T D S L A V A R K M F P G K R N S L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S T T S S S T T S
G G G T S S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A L C A R Y E I D N S K R T L H G A L L D A Q I L A E V Y L A M T G G Q L S L P L A M Q A S K L R V V F A T D E E I A A H E A R L D L V Q K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S
S T
S
S

. . . . . . . . .

Sequence K G G S C L W R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	Q	I	V	L	D	T	E	T	T	G	M	N	Q	I	G	A	H	Y	E	G	H	K	I	I	E	I	G	A	V	E	V	V	N	R	R	L	T	G	N	N	F	H	V	Y	L	K	P	D	R	L	V	D	P	E	A	F	G	V	H	G	I	A	D	E	F	L	L	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S				S	S	S		T	T	T	T													T	T				S										S	S														G	G	G	S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	T	F	A	E	V	A	D	E	F	M	D	Y	I	R	G	A	E	L	V	I	H	N	A	A	F	D	I	G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K	T	N	T	F	C	K	V	T	D	S	L	A	V	A	R	K	M	F	P	G	K	R	N	S	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	S									T	T	S					S	S															T	T	S					G	G	G	T	S													S	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	L	C	A	R	Y	E	I	D	N	S	K	R	T	L	H	G	A	L	L	D	A	Q	I	L	A	E	V	Y	L	A	M	T	G	G	Q	L	S	L	P	L	A	M	Q	A	S	K	L	R	V	V	F	A	T	D	E	E	I	A	A	H	E	A	R	L	D	L	V	Q	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T				S	S		S			S																T		S					S
	.	.	.	.	.	.	.	.	.
Sequence	K	G	G	S	C	L	W	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S			S	T	T