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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5fkvA_

Fold library idPDB HeaderMoleculeTitle
c5fkvA_PDB header: transferaseChain: A: PDB Molecule: dna polymerase iii subunit alpha;PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)


Added to library: Sat Nov 28 08:46:01 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADF
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Known secondary structure (DSSP)








SB

GGGSSS

S
TT
SB

B

BT

TTT
B

 .........80.........90.........100.........110.........120.........130.........140
Sequence NVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVG
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Known secondary structure (DSSP)

TTTTT


S

BTTB

B
TTS
TT

GGGS
 .........150.........160.........170.........180.........190.........200.........210
Sequence RSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDF
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Known secondary structure (DSSP) T

TT


S

TTT




B
BSSGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence DAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQ
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Known secondary structure (DSSP) T

TT
TTS




TT
B


TTT







S





 .........290.........300.........310.........320.........330.........340.........350
Sequence FPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW
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Known secondary structure (DSSP)


TTS


SST
 .........360.........370.........380.........390.........400.........410.........420
Sequence SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
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Known secondary structure (DSSP) TT



S

TTGGG
TTSS
S
TTTTT

GGGT

TTS
S






GGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEE
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Known secondary structure (DSSP)
GGG

B


TT

TTS


TT


T
 .........500.........510.........520.........530.........540.........550.........560
Sequence VKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLR
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Known secondary structure (DSSP) STT


B


S
SS
GGGTS


TTS
S
SS
TT



S
 .........570.........580.........590.........600.........610.........620.........630
Sequence TLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFED
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Known secondary structure (DSSP) TT




GGGS
TT
TT

TTSTT





S
 .........640.........650.........660.........670.........680.........690.........700
Sequence MIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY
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Known secondary structure (DSSP) SSTTTTTSS


SB
SSSB
GGGGGGTT


BTT

 .........710.........720.........730.........740.........750.........760.........770
Sequence TLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ
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Known secondary structure (DSSP)


TT

TT
B
 .........780.........790.........800.........810.........820.........830.........840
Sequence TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
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Known secondary structure (DSSP) STTT
S
T


B


TTT

SS
B

SS
S
B

STTSSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD
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Known secondary structure (DSSP)

S
S

SS
TTTS
TTTTTT
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence QHAKAEAIGQLDLFGVLPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVIT
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Known secondary structure (DSSP) T




S




STTT

TTS
S
GGG



TS


SSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM
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Known secondary structure (DSSP)

S





SS




TTTT
S

SSSS

TT




SSSSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR
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Known secondary structure (DSSP)


TSS


S


STTTTTTTSB
S



SS




SS

 .........1130.........1140.....
Sequence VSPSDRLLNDLRGLIGSEQVELEFD
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Known secondary structure (DSSP) B
TTTTT





TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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