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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5fjaA_

Fold library idPDB HeaderMoleculeTitle
c5fjaA_PDB header: transcriptionChain: A: PDB Molecule: dna-directed rna polymerase iii subunit rpc1;PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a


Added to library: Sat Nov 28 08:40:56 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATCH
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Known secondary structure (DSSP)




















SSS
SSB

S
SS

B
TTT

B
SSSS
TTT


SSS


SSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRRPGVDNLRRMGIL
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Known secondary structure (DSSP) SGGGT







SS



STTTTSB
SSSSSB


TTTSSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence KKILDQCKKQRRCLHCGALNGVVKKAAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKR
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Known secondary structure (DSSP)




SS




















TT



S

 .........220.........230.........240.........250.........260.........270.........280
Sequence CMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV
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Known secondary structure (DSSP)



SSSS

SS

TTTT



SSS
STTTTS
SS


TTTS


B

SSS
B


 .........290.........300.........310.........320.........330.........340.........350
Sequence KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINKPIRGFCQRLKGKQGRFRGNLSGKRVDFS
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Known secondary structure (DSSP) SSSSS








SSSS


SS







S
 .........360.........370.........380.........390.........400.........410.........420
Sequence GRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRY
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Known secondary structure (DSSP)


SSS
TTSS





SST
SSSSS

TT

S

SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence GDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDE
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Known secondary structure (DSSP) S

TT

TT



TT

SS

STTSSSSS

TT

TTTT


TT

 .........500.........510.........520.........530.........540.........550.........560
Sequence MNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDG
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Known secondary structure (DSSP)


STSBTTTTSB
TTT
SB




T
SS


SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence IEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNEMSQNDGFVIIRG
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Known secondary structure (DSSP) S







SS
SSS



SSS








SS




SSSS

TT
SSS

BSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence SQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQK
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Known secondary structure (DSSP) S
B
SS


SSSSSS
SS

S





S

ST
 .........710.........720.........730.........740.........750.........760.........770
Sequence KEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMAT
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Known secondary structure (DSSP) TTTS




SS
STTST

TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence CGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAI
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Known secondary structure (DSSP) TTSS

T





BTTBS


SSSS
S
TTS
SS

STTSSS




TTT


GGGT
 .........850.........860.........870.........880.........890.........900.........910
Sequence SGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGNAQPVNFN
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Known secondary structure (DSSP) SS

TTS

TT

SSGGGT


SSS

STTSS

 .........920.........930.........940.........950.........960.........970.........980
Sequence RSWDHAYNITFNNQDKGLLPYAIMETANEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYH
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Known secondary structure (DSSP) S

SSS



SSTS


BTTTB


SS

S

S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SLREYINGKATALANLRKSRGMLGLLEPPAKELQGIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIALF
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Known secondary structure (DSSP) TTT




SS


S
S


GGGGS
T



T
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KYRKARLEPGTAIGAIGAQSIGEPMNVTLGVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVE
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Known secondary structure (DSSP) SS

SS








ST
S

SS


SS

SSTTTTTSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence KTLLSDVAFYVQDVYKDNLSFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAI
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Known secondary structure (DSSP) S
ST
TT

TT
S

ST





STT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence NVFPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINIRDDGKRELLVEGYGLRDVMCTDGVIGSRTTTN
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Known secondary structure (DSSP)




TTTTTS
SSS
S

STTTSS
TSTTS

SS
S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence HVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLA
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Known secondary structure (DSSP)
TTTT
TTTSSS


TTSS


SSTTTS
SS


 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVVKGTNISEKDLVPKRCLFESLSNEAAL
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Known secondary structure (DSSP) S
SSTT





ST


SSGGGGS








SSTT




SSTTS
 ...
Sequence KAN
Predicted secondary structure


SS confidence


Known secondary structure (DSSP) S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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