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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5fj9O_

Fold library idPDB HeaderMoleculeTitle
c5fj9O_PDB header: transcriptionChain: O: PDB Molecule: dna-directed rna polymerase iii subunit rpc3;PDBTitle: cryo-em structure of yeast apo rna polymerase iii at 4.6 a


Added to library: Sat Nov 28 08:34:20 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VMTISSLEQRTLNPDLFLYKELVKAHLGERAASVIGMLVALGRLSVRELVEKIDGMDVDSVKTTLVSLTQ
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Known secondary structure (DSSP)

STTTTTTTSS
SSTT
TS
S
TTTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LRCVKYLQETAISGKKTTYYYYNEEGIHILLYSGLIIDEIITQMRVNDEEEHKQLVAEIVQNVISLGSLT
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Known secondary structure (DSSP) TT


SSSS

TTTTTTT
SS
S
TS
B
 .........150.........160.........170.........180.........190.........200.........210
Sequence VEDYLSSVTSDSMKYTISSLFVQLCEMGYLIQISKLHYTPIEDLWQFLYEKHYKNIPRNSPLSDLKKRSQ
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Known secondary structure (DSSP) S
SSS
SSSTTTTTSSSS


TTSSS
STTTTT

SS

S

T
 .........220.........230.........240.........250.........260.........270.........280
Sequence AKMNAKTDFAKIINKPNELSQILTVDPKTSLRIVKPTVSLTINLDRFMKGRRSKQLINLAKTRVGSVTAQ
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Known secondary structure (DSSP) S

TTTT


SSSS



SSS


SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VYKIALRLTEQKSPKIRDPLTQTGLLQDLEEAKSFQDEAELVEEKTPGLTFNAIINSHLKILASSNFPFL
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Known secondary structure (DSSP) SSS

GGG

SSSTTS


SSTTS



TTTS

SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence NETKPGVYYVPYSKLMPVLKSSVYEYVIASTLGPSAMRLSRCIRDNKLVSEKIINSTALMKEKDIRSTLA
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Known secondary structure (DSSP)
TT

SSTS
S
SB
S
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence SLIRYNSVEIQEVPRTADRSASRAVFLFRCKETHSYNFMRQNLEWNMANLLFKKEKLKQENSTLLKKANR
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Known secondary structure (DSSP) TTSSSS





SSSSS
SSS



B


SSTTT
 .........500.........510.........520........
Sequence DDLLPSELNQLKMVNERELNVFARLSRLLSLWEVFQMA
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Known secondary structure (DSSP)


TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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