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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5fj9B_

Fold library idPDB HeaderMoleculeTitle
c5fj9B_PDB header: transcriptionChain: B: PDB Molecule: dna-directed rna polymerase iii subunit rpc2;PDBTitle: cryo-em structure of yeast apo rna polymerase iii at 4.6 a


Added to library: Sat Nov 28 08:37:14 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSS
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Known secondary structure (DSSP)



TS
S





SSSS


S
BTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence SSTKDYLTPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLN
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Known secondary structure (DSSP) BSS
SS


S



B



TT






B

SSSTTSSSTT

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence ECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHN
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Known secondary structure (DSSP)

TT





SSS

SS


STT
TTTT
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence SIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQ
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Known secondary structure (DSSP) SBSS
TT


STTTT
SSTTS

SSSB



SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLIS
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Known secondary structure (DSSP) S



STSSSSS

SS
SSSS
S

S
SGGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence LLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGVT
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Known secondary structure (DSSP) TSSS


SSSSS



B

SSS


B
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence HVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDE
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Known secondary structure (DSSP)


SSSS





SS

TTTS

GGGBTTB
SS



SSS
SSS
BSS





 .........500.........510.........520.........530.........540.........550.........560
Sequence EEPIKKLCYVLGVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSH
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Known secondary structure (DSSP) SSTTTT


TTTS
S

S
SS

TT



S
TTS

SS
TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence QMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKD
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Known secondary structure (DSSP) TT




TTSS
TTT


SSTTS
TTS
B
S
GGG
 .........640.........650.........660.........670.........680.........690.........700
Sequence IVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPM
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Known secondary structure (DSSP)

TT
S
S
GGGGSBSGGGSSSSSTTS
GGGS




SGGGG


SSS



S
 .........710.........720.........730.........740.........750.........760.........770
Sequence VKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDI
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Known secondary structure (DSSP)
TT
TTS

S





SS
SSSTTTSSS
SS

B
TT

B

 .........780.........790.........800.........810.........820.........830.........840
Sequence IGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRG
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Known secondary structure (DSSP)






SSSSS
TTT



TTSB

SS

SS

SB


STTSS
S


SSS
SS








 .........850.........860.........870.........880.........890.........900.........910
Sequence PEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMN
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Known secondary structure (DSSP) SS


SS




TT

SSS

SSSS

TTT



S

 .........920.........930.........940.........950.........960.........970.........980
Sequence PHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQA
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Known secondary structure (DSSP) TTT

TTS
TTS
STTT

SSS



B
SSS
SB
SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence YIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMI
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Known secondary structure (DSSP)




S

STTT




S

B
SSS

B

SSSS






TT
STTT
 .........1060.........1070.........1080.........1090.........1100.........1110....
Sequence SSDAFEVDVCDKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLEDIFQQ
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Known secondary structure (DSSP) TT


SSS

BTTBBTTB

SSS

SS








S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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