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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5fbfA_

Fold library idPDB HeaderMoleculeTitle
c5fbfA_1.04PDB header: hydrolaseChain: A: PDB Molecule: nuclease s1;


Added to library: Sat Feb 11 01:45:45 2017
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence WGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTDAGEFSKPYHFIDAQDNPPQ
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Known secondary structure (DSSP)

S
T

STTTTGGGTTTTSTTTGGGGGGG





BTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence SCGVDYDRDCGSAGCSISAIQNYTNILLESPNGSEALNALKFVVHIIGDIHQPLHDENLEAGGNGIDVTY
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Known secondary structure (DSSP) B



S
TT


TTSTTTSGGGG

TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence DGETTNLHHIWDTNMPEEAAGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTSMIWAAD
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Known secondary structure (DSSP) TTTTSSSTSTTTTTTTT

TT
 .........220.........230.........240.........250.........260.......
Sequence ANTYVCSTVLDDGLAYINSTDLSGEYYDKSQPVFEELIAKAGYRLAAWLDLIASQPS
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Known secondary structure (DSSP) TTSTT
S
TTTT



Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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