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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5f56A_

Fold library idPDB HeaderMoleculeTitle
c5f56A_2.30PDB header: dna binding protein/dnaChain: A: PDB Molecule: single-stranded-dna-specific exonuclease;


Added to library: Sat Jun 18 08:26:47 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SRPAHWLLAPPASRDALLATMREWQVSPPVAQVLCGRDLRTELLALPLELTPNPALREAARHIVAAVREG
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T

TT









TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KRIRIHGDYDADGVSATATLVLGLRAIGANVHGFIPHRLNEGYGIHPDRVPEHAAAADLVVTVDCGVSNL
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SSTTT



TTTT
SS

GGG
SSS

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence DEVKSLLATGTEVVVTDHHAPGENFPECLVVHPHLTPDYDPDRHNLTGAGVAYHLLWAVYEELGRPEPRA
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Known secondary structure (DSSP) TT


S


SS

SS
GGGSTT

TTT



TT



GG
 .........220.........230.........240.........250.........260.........270.........280
Sequence LLPLATLGTVADVAPLLGENRALVRAGLAEMARTELPGLRALMNEKRVRQPTARDVAFILAPRINAAGRM
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Known secondary structure (DSSP) GTT

SST


TT

S

TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence GEADRALELLTTPSDHEAKSLAAYLEIRNQERRKIQDDMFAQALQLADPNDPALVLTHDDWHAGVMGIVA
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Known secondary structure (DSSP) T





TTSSS
TT

GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence SKLVETFNRPVYIVAQGKGSVRSTPGISAVQGLRESRDLLGRFGGHPGAAGFSLDPQNFGALRERIHGYV
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Known secondary structure (DSSP)
S
TT

TTS
TTGGG
SS
GGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence RQFPTPVPAVRLDAPLPVAALTPELLSELSILEPFGEGNPRPLWHLRGPLTDTRLVGKQGDVLQFRFGGV
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Known secondary structure (DSSP) TS







GGG
SGGGG
S
BTTB



SSS

TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence KGMKYSERDDAAGERDVAAELALNEWKGRTSLELHAAALRPLAPLALAGTEEGLPTLPRLNPREAMTFLK
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Known secondary structure (DSSP) TT






SSSS



BTT


SS
SS
B

 .........570.........580.........590.........600.........610.........620.........630
Sequence TGAAAYAEQGVATYLRDNVPGLTLLDTNAPHPGGDLILYGLPPESALRRWLHEAQEQGGRVAFALGPKTL
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Known secondary structure (DSSP) TT


STT

B

TTS


SSSS


T



 .........640.........650.........660.........670.........680.........690.........700
Sequence AELDAALTLAKLLPDSHTEAAQEAAADAYRSWQWAHHYRVLNDAGWSASVYAMLGLPVPAALPKAAEALA
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Known secondary structure (DSSP) T

S
S


B
TT






 ...
Sequence LAA
Predicted secondary structure

SS confidence


Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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