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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5f4hF_

Fold library idPDB HeaderMoleculeTitle
c5f4hF_2.70PDB header: hydrolaseChain: F: PDB Molecule: nucleotide binding protein pinc;


Added to library: Thu Feb 9 15:42:46 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNDLMLDKSALLFGVSKYLEKGIITGNVLIHKSLLAELERESNDGLVSAEIALDEVKKLKDITERILVNF
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Known secondary structure (DSSP)


TTTSS
STT
TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence EIVGDDSKKGEANELSREYCLEKGCIIVTADETQKKICDAMGIQYNFLQPLKQGLSFESFFDDETMSLHI
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Known secondary structure (DSSP) S
TTS
S
T
S
T




SSSS
TTGGGGTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence KEDTVPRAKKGKPGNWKFVNLSDKPMLSTDVRMIANEIINAVRLIKGSFVEIERRGSLIIQLGNYRVVIT
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Known secondary structure (DSSP) TTS

SSSSS
S
SS


SSS

SSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence RPPLSDGWEITITRPVVRKRLEDYNLDERLIKRLEERAEGIIIAGAPGMGATTFAQALAEYYMRLGKIVK
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Known secondary structure (DSSP)
TTTSSS







SGGG


T


TTTTTT

 .........290.........300.........310.........320.........330.........340.........350
Sequence TIESPRDMHLPPEITQYSKNYAEIGELHDILLLSRPDYTVYDEMRNDEDFKLYVDLRLAGVGMVGVVHAT
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Known secondary structure (DSSP) SS





TTSGGG

TT

S
S

STT
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence SPIDAIHRFVNRVDIGTIPNILDTIIFINSGNVSKVYTLEMTVKVPAGLKEADLARPVVEIKDLATGNTE
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Known secondary structure (DSSP)
SS
GGG

TT

SSS
TTS

TTT

 .........430......
Sequence YEIYVFGEQTMIVPVN
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Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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