PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5f1bC_

Fold library id	PDB Header	Molecule	Title
c5f1bC_	2.30	PDB header: viral protein/transport protein	Chain: C: PDB Molecule: niemann-pick c1 protein;

Links to external resources
Added to library: Sat Jan 23 08:37:34 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L E K E Y F D Q H F G P F F R T E Q L I I R A P L T D K H I Y Q P Y P S G A D V P F G P P L D I Q I L H Q V L D L Q I A I E N I T A S Y D N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
T T
T T T
G G G S T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E T V T L Q D I C L A P L S P Y N T N C T I L S V L N Y F Q N S H S V L D H K K G D D F F V Y A D Y H T H F L Y C V R A P A S L N D T S L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T T T T
B S G G G G G T T
T
S S
T T
T T
S
S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H D P C L G T F G G P V F P W L V L G G Y D D Q N Y N N A T A L V I T F P V N N Y Y N D T E K L Q R A Q A W E K E F I N F V K N Y K N P N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S S
S
T T
G G G
S
T T
T
T T

. . . . .

Sequence T I S F T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	E	K	E	Y	F	D	Q	H	F	G	P	F	F	R	T	E	Q	L	I	I	R	A	P	L	T	D	K	H	I	Y	Q	P	Y	P	S	G	A	D	V	P	F	G	P	P	L	D	I	Q	I	L	H	Q	V	L	D	L	Q	I	A	I	E	N	I	T	A	S	Y	D	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T	T	T											T	T									T	T	T								G	G	G	S																T						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	T	V	T	L	Q	D	I	C	L	A	P	L	S	P	Y	N	T	N	C	T	I	L	S	V	L	N	Y	F	Q	N	S	H	S	V	L	D	H	K	K	G	D	D	F	F	V	Y	A	D	Y	H	T	H	F	L	Y	C	V	R	A	P	A	S	L	N	D	T	S	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									B			T	T	T	T	T							B	S	G	G	G	G	G	T	T						T						S	S														T	T		T	T		S			S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	D	P	C	L	G	T	F	G	G	P	V	F	P	W	L	V	L	G	G	Y	D	D	Q	N	Y	N	N	A	T	A	L	V	I	T	F	P	V	N	N	Y	Y	N	D	T	E	K	L	Q	R	A	Q	A	W	E	K	E	F	I	N	F	V	K	N	Y	K	N	P	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S		T	T	S	S										S			T	T		G	G	G		S												T	T																					T				T	T
	.	.	.	.	.
Sequence	T	I	S	F	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)