PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5f0oA_

Fold library id	PDB Header	Molecule	Title
c5f0oA_	3.50	PDB header: cell cycle	Chain: A: PDB Molecule: cohesin subunit pds5, klth0d07062p,klth0d07062p,

Links to external resources
Added to library: Sat Apr 16 08:24:18 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X X X X X X X X X X X X X X X X X L E R Y R A D L I D R K I L R N K D H G V R A F A A C C L S D I L R L Y A P D A P Y T D K E L T E I F R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
S S T T T T
S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F L A Q L K L L Q E P E N G Y L T Q Q T Y L I N N L L E Y R S I V I L T D L P S S S Q L V E E L F N I F Y S P T N S T I Q G N M F T A I G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G
S
S S
T T T
T T T S S
S T T T T T T S T T
T T S
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I L G E V I S E C D S L P M S A L K M V F N K F L S H K R A E S L D G I P G F E I S L I I C Q T Y S N R L G R H F I K F Y S E I M Y E V L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T T T S S S
S S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E A S S A Y K T L V K I G N L T S E L W K Y A P E L V G S V T G L L Y Q L L C S D N E L F R E S A T K C V S K M L G T H S L I N F A V A H S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S T T S T T T T T T T T S
S S S
S S T T T T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence D T Y K I W L S K M A D I S P H V R Q A W V S E I P S I L M S R S D L S D D I S K G L A K A L I D S D H T V R L S A I Q T F H E V P V K R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S
T T S T T
S T T T T S
S S T S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence W E C L P N A A V F A G L V H L T R E T R R D L R D E C I D A V A R I Y T E S I E S I P K T N E N K E I W G V V E T I P S A C F N L Y Y I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S T S
S T T T T T S S T T G G G S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence D L E I N M K V D L L T F E K F L P L G L S N E E F V Q R L L T L L Q G F N E K A F S S F Y A F N R R Q D Q M S T V L W K F I E F C E E T N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S
T T S
T T S
S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence S Q S P A A S L S D T K L I K T V E W I S S G F P S H L N V E Q I L L A F R E L N D R R L Y R L I K V A V A E T S K H L T V R N A V S E L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G S S S S T T S S
G G G
T T S
T T
T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence K R L E E P E L F R K K N I K I E S R F T R D N F S T V F R V L I Y R A A P I I F N I S N L P S F L N T S N E D E K A L K R Q L I D N I S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T T
S S S
S
S T T
G G G S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence I K P G I F K D Q V K N L V T I I T T L S L A E A M R T V Y K I S K T F F F Q K L E D Y A K E G N P L E A K Y A I K L L G L A P N A A E Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T T S S
S S
T S
T T S T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence S E V A T A I L P L D L K S K H F A S N V L V L A E I T K M Q P Q L L E K D S T E I V G L L I K D V L L S N D V V G D E D D Q Q A W F S D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S T T
G G G G T T T T T T T T T S
S
S
S S
S
T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence D I Y T G K A D A L S A K V F S L K L F A N K I K V M A M T H A F T E R T L K L F F Y L V A S G G E L V S E S N T D N Y P T P A N Y Q N K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
T T T S
S
S
S S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence R C C A G L H I L K I T K I A F I K P Q D I S K L M N L V E D E S L E V R S S F I G R L K D F L G D G S I S I K F L P L V F F T A Y E P D Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S S T T
S
G G G S G G G G G
T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence A L R T S T K M W I N Y T L S K E N F R K G T F F E R A L P R L I H F I A H H P D V A E G L R L L T G L T T A I D Y L V F Y A D S V L K A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T T T T T T T S T
T T S
G G G G G G G S
S S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . .

Sequence N L A L L Y Y L A G R V R Q Y X X X X X X X X X X X X X X X X X X X X X X X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G
T T T T T
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	L	E	R	Y	R	A	D	L	I	D	R	K	I	L	R	N	K	D	H	G	V	R	A	F	A	A	C	C	L	S	D	I	L	R	L	Y	A	P	D	A	P	Y	T	D	K	E	L	T	E	I	F	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S					T	T	S							S	S	T	T															T	T		S	S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	L	A	Q	L	K	L	L	Q	E	P	E	N	G	Y	L	T	Q	Q	T	Y	L	I	N	N	L	L	E	Y	R	S	I	V	I	L	T	D	L	P	S	S	S	Q	L	V	E	E	L	F	N	I	F	Y	S	P	T	N	S	T	I	Q	G	N	M	F	T	A	I	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G	G		S		S	S		T	T												T		T	T	T					S	S			S						T	T	T	T	T	T	S	T	T		T	T	S		G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	L	G	E	V	I	S	E	C	D	S	L	P	M	S	A	L	K	M	V	F	N	K	F	L	S	H	K	R	A	E	S	L	D	G	I	P	G	F	E	I	S	L	I	I	C	Q	T	Y	S	N	R	L	G	R	H	F	I	K	F	Y	S	E	I	M	Y	E	V	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T		S	S												T	T	T	T						S	S	S					S										S																				T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	A	S	S	A	Y	K	T	L	V	K	I	G	N	L	T	S	E	L	W	K	Y	A	P	E	L	V	G	S	V	T	G	L	L	Y	Q	L	L	C	S	D	N	E	L	F	R	E	S	A	T	K	C	V	S	K	M	L	G	T	H	S	L	I	N	F	A	V	A	H	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T																	S					T	T	S	T	T	T	T	T	T	T	T	S		S	S																	S			S	S	T	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	D	T	Y	K	I	W	L	S	K	M	A	D	I	S	P	H	V	R	Q	A	W	V	S	E	I	P	S	I	L	M	S	R	S	D	L	S	D	D	I	S	K	G	L	A	K	A	L	I	D	S	D	H	T	V	R	L	S	A	I	Q	T	F	H	E	V	P	V	K	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S		S									T	T	S						T	T		S	T	T											T	T	S		S	S									T					S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	W	E	C	L	P	N	A	A	V	F	A	G	L	V	H	L	T	R	E	T	R	R	D	L	R	D	E	C	I	D	A	V	A	R	I	Y	T	E	S	I	E	S	I	P	K	T	N	E	N	K	E	I	W	G	V	V	E	T	I	P	S	A	C	F	N	L	Y	Y	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																G	G	G		S	S																					T	S				S	T	T	T	T	T					S	S						T	T	G	G	G	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	D	L	E	I	N	M	K	V	D	L	L	T	F	E	K	F	L	P	L	G	L	S	N	E	E	F	V	Q	R	L	L	T	L	L	Q	G	F	N	E	K	A	F	S	S	F	Y	A	F	N	R	R	Q	D	Q	M	S	T	V	L	W	K	F	I	E	F	C	E	E	T	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T	T	S		T	T	S													T	T	S																																		S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	S	Q	S	P	A	A	S	L	S	D	T	K	L	I	K	T	V	E	W	I	S	S	G	F	P	S	H	L	N	V	E	Q	I	L	L	A	F	R	E	L	N	D	R	R	L	Y	R	L	I	K	V	A	V	A	E	T	S	K	H	L	T	V	R	N	A	V	S	E	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	G	G	G	S	S	S	S											T	T	S	S		G	G	G										T	T	S												T	T		T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	K	R	L	E	E	P	E	L	F	R	K	K	N	I	K	I	E	S	R	F	T	R	D	N	F	S	T	V	F	R	V	L	I	Y	R	A	A	P	I	I	F	N	I	S	N	L	P	S	F	L	N	T	S	N	E	D	E	K	A	L	K	R	Q	L	I	D	N	I	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T		T	T					T	T				S	S	S																		S		S	T	T		G	G	G						S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	I	K	P	G	I	F	K	D	Q	V	K	N	L	V	T	I	I	T	T	L	S	L	A	E	A	M	R	T	V	Y	K	I	S	K	T	F	F	F	Q	K	L	E	D	Y	A	K	E	G	N	P	L	E	A	K	Y	A	I	K	L	L	G	L	A	P	N	A	A	E	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	G	T	T	S	S												S	S													T												S													T	T	S	T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	S	E	V	A	T	A	I	L	P	L	D	L	K	S	K	H	F	A	S	N	V	L	V	L	A	E	I	T	K	M	Q	P	Q	L	L	E	K	D	S	T	E	I	V	G	L	L	I	K	D	V	L	L	S	N	D	V	V	G	D	E	D	D	Q	Q	A	W	F	S	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S			T	T	S	T	T																G	G	G	G	T	T	T	T	T	T	T								T	T	S			S			S			S	S			S				T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	D	I	Y	T	G	K	A	D	A	L	S	A	K	V	F	S	L	K	L	F	A	N	K	I	K	V	M	A	M	T	H	A	F	T	E	R	T	L	K	L	F	F	Y	L	V	A	S	G	G	E	L	V	S	E	S	N	T	D	N	Y	P	T	P	A	N	Y	Q	N	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	T	T																																					T	T	T	S			S		S			S	S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	R	C	C	A	G	L	H	I	L	K	I	T	K	I	A	F	I	K	P	Q	D	I	S	K	L	M	N	L	V	E	D	E	S	L	E	V	R	S	S	F	I	G	R	L	K	D	F	L	G	D	G	S	I	S	I	K	F	L	P	L	V	F	F	T	A	Y	E	P	D	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T												T					T		S	S																	T	T		S		G	G	G	S	G	G	G	G	G		T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	A	L	R	T	S	T	K	M	W	I	N	Y	T	L	S	K	E	N	F	R	K	G	T	F	F	E	R	A	L	P	R	L	I	H	F	I	A	H	H	P	D	V	A	E	G	L	R	L	L	T	G	L	T	T	A	I	D	Y	L	V	F	Y	A	D	S	V	L	K	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S					T	T	T	T	T	T	T	T	S									T						T	T	S				G	G	G	G	G	G	G										S		S	S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.
Sequence	N	L	A	L	L	Y	Y	L	A	G	R	V	R	Q	Y	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	G	G	G					T	T	T	T	T				T	T	T									T