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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5f0kE_

Fold library idPDB HeaderMoleculeTitle
c5f0kE_3.07PDB header: protein transportChain: E: PDB Molecule: vacuolar protein sorting-associated protein 35;


Added to library: Thu Feb 9 11:49:02 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GSKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYL
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Known secondary structure (DSSP)
TT
GGGGG
SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence TDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLRGLFLRN
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Known secondary structure (DSSP) S
SSTTTT
SSTT
GGGGGG


 .........150.........160.........170.........180.........190.........200.........210
Sequence YLLQCTRNILPDEGEPTDEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVG
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Known secondary structure (DSSP) TTTS

SSS


TT



S
TT

T
 .........220.........230.........240.........250.........260.........270.........280
Sequence TNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQ
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Known secondary structure (DSSP) TT
SS

T

S
T
S
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence NVNVKNIIIALIDRLALFAHREDGDIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYVDYV
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Known secondary structure (DSSP) TS

S





S




 .........360.........370.........380.........390.........400.........410.........420
Sequence DKVLETTVEIFNSSAVSKELTRLLKIPVDILTVLKLKHFHPLFEYKSMSCYVLSNVLQDQVDSIMNLVST
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Known secondary structure (DSSP)




GGGT
SSTTTTTT




 ...
Sequence LIQ
Predicted secondary structure

SS confidence


Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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