PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5eyfA_

Fold library id	PDB Header	Molecule	Title
c5eyfA_	PDB header: solute-binding protein	Chain: A: PDB Molecule: glutamate abc superfamily atp binding cassette transporter,	PDBTitle: crystal structure of solute-binding protein from enterococcus faecium2 with bound glutamate

Links to external resources
Added to library: Sat Dec 19 08:46:12 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E D I L E R S K S T N E I I W G V K Y D T R L F G X X D I E S R T V Q G F D V D I A K A I T K K I L G D N G K T E F V E V T S K T R I P L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S T T T T T T T S
T T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K N G N I D A I I A T X T I T D E R K K Q V D F S D V Y F D A G Q A L L V K K G S Q I K S V D D L N A S T T V L A V K G S T S A A N I R Q H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S
S S
B
T T G G G T
T T
S
S G G G
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A P D A K I L E L E N Y A E A F T A L Q S G Q G D A X T T D N A I L L G I A D E N P E Y E L V G G T F T N E P Y G I A I N K G Q E N F L K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S S S T T S
S T T
T T S
S S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 .

Sequence V N Q A L E E X H A D G T Y D K I Y Q K W F P N E T E G K V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	D	I	L	E	R	S	K	S	T	N	E	I	I	W	G	V	K	Y	D	T	R	L	F	G	X	X	D	I	E	S	R	T	V	Q	G	F	D	V	D	I	A	K	A	I	T	K	K	I	L	G	D	N	G	K	T	E	F	V	E	V	T	S	K	T	R	I	P	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T								S			T	T	T					T	T	T	T				S																T	T										T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	N	G	N	I	D	A	I	I	A	T	X	T	I	T	D	E	R	K	K	Q	V	D	F	S	D	V	Y	F	D	A	G	Q	A	L	L	V	K	K	G	S	Q	I	K	S	V	D	D	L	N	A	S	T	T	V	L	A	V	K	G	S	T	S	A	A	N	I	R	Q	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	S		S				S	S		B			T	T	G	G	G	T																		T	T		S			S	G	G	G			T	T							T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	P	D	A	K	I	L	E	L	E	N	Y	A	E	A	F	T	A	L	Q	S	G	Q	G	D	A	X	T	T	D	N	A	I	L	L	G	I	A	D	E	N	P	E	Y	E	L	V	G	G	T	F	T	N	E	P	Y	G	I	A	I	N	K	G	Q	E	N	F	L	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T	S						S	S										T	T	S		S														T	T		T	T					S			S	S										T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Sequence	V	N	Q	A	L	E	E	X	H	A	D	G	T	Y	D	K	I	Y	Q	K	W	F	P	N	E	T	E	G	K	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T											T	T			T	T