PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5ewoA_

Fold library id	PDB Header	Molecule	Title
c5ewoA_	PDB header: viral protein	Chain: A: PDB Molecule: structural protein;	PDBTitle: crystal structure of the human astrovirus 1 capsid protein spike2 domain at 0.95-a resolution

Links to external resources
Added to library: Sat Dec 26 08:13:29 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E Y K V V L T F G S P M S P N A N N K Q T W V N K P L D A P S G H Y N V K I A K D V D H Y L T M Q G F T S I A S V D W Y T I D F Q P S E A P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T S
S S
S T T
T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A P I K G L Q V L V N I S K K A D V Y A V K Q F V T A Q T N N K H Q V T S L F L V K V T T G F Q V N N Y L S Y F Y R A S A T G D A T T N L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T S S
S T T
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V R G D T Y T A G I S F T Q G G W Y L L T N T S I V D G A M P P G W V W N N V E L K T N T A Y H M D K G L V H L I M P L P E S T Q M C Y E M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S
S S S
S S S
B
T T T T T S S S
T T

. . . .

Sequence L T S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	Y	K	V	V	L	T	F	G	S	P	M	S	P	N	A	N	N	K	Q	T	W	V	N	K	P	L	D	A	P	S	G	H	Y	N	V	K	I	A	K	D	V	D	H	Y	L	T	M	Q	G	F	T	S	I	A	S	V	D	W	Y	T	I	D	F	Q	P	S	E	A	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S			T	T			T	T	S							S	S			S	T	T										T	T																			T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	P	I	K	G	L	Q	V	L	V	N	I	S	K	K	A	D	V	Y	A	V	K	Q	F	V	T	A	Q	T	N	N	K	H	Q	V	T	S	L	F	L	V	K	V	T	T	G	F	Q	V	N	N	Y	L	S	Y	F	Y	R	A	S	A	T	G	D	A	T	T	N	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T						T	T																		T	T													S	S																	S	T	T					B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	R	G	D	T	Y	T	A	G	I	S	F	T	Q	G	G	W	Y	L	L	T	N	T	S	I	V	D	G	A	M	P	P	G	W	V	W	N	N	V	E	L	K	T	N	T	A	Y	H	M	D	K	G	L	V	H	L	I	M	P	L	P	E	S	T	Q	M	C	Y	E	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S										T	T													S				S	S	S									S	S	S		B				T	T	T	T	T	S	S	S				T	T
	.	.	.	.
Sequence	L	T	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B	S