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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ewnA_

Fold library idPDB HeaderMoleculeTitle
c5ewnA_PDB header: viral proteinChain: A: PDB Molecule: structural protein;PDBTitle: crystal structure of the human astrovirus 1 capsid protein core domain2 at 2.6 a resolution


Added to library: Sat Dec 26 08:14:02 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AICQRATATLGTVGSNTSGTTEIEACILLNPVLVKDATGSTQFGPVQALGAQYSMWKLKYLNVKLTSMVG
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Known secondary structure (DSSP)



SSS

STTT



TT

TTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence ASAVNGTVLRVSLNPTSTPSSTSWSGLGARKHLDVTVGKNATFKLKPSDLGGPRDGWWLTNTNDNASDTL
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Known secondary structure (DSSP) TTTS
TT






SSTT



BTBTBB

TTT
STTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence GPSIEIHTLGRTMSSYKNEQFTGGLFLVELASEWCFTGYAANPNLVNLVKSTDNQVPVTFEGSAGSPLIM
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Known secondary structure (DSSP)

S

TTTT

S


GGGGS



TTSB
 .........220.........230.........240.........250.........260.........270.........280
Sequence NVSEGSHFARTVLARSTTPTTLAGERTTSDTVWQVLNTAVSAAELVTPPPFNWLVKGGWWFVKLIAGRTR
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Known secondary structure (DSSP) TTSS



B


S

B
S



SGGGGG



TT
TTBSS
SS
 .........290.........300.........310.........320.
Sequence TGSRSFYVYPSYQDALSNKPALCTGSTPVTTTLQFTQMNQP
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Known secondary structure (DSSP) TTSSTT


B
SS







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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