PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5eszG_

Fold library id	PDB Header	Molecule	Title
c5eszG_	PDB header: immune system	Chain: G: PDB Molecule: 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase,	PDBTitle: crystal structure of broadly neutralizing antibody ch04, isolated from2 donor ch0219, in complex with scaffolded trimeric hiv-1 env v1v23 domain from the clade ae strain a244

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Added to library: Sat Dec 19 08:19:38 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S L I R I G H G F D V H C V T L H C T N E V R N C S F N M T T E L R D K K Q K V H A L F Y K L D I V P I E N S K Y R L I G G D V A L H A L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D A I L G A A A L G K N A D S R G L L R E A F R Q V Q E K G Y K I G N V D I T H I D A M R A K I A E D L Q C D I E Q V N I A C E A V A L L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T T
G G G

. .

Sequence R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	L	I	R	I	G	H	G	F	D	V	H	C	V	T	L	H	C	T	N	E	V	R	N	C	S	F	N	M	T	T	E	L	R	D	K	K	Q	K	V	H	A	L	F	Y	K	L	D	I	V	P	I	E	N	S	K	Y	R	L	I	G	G	D	V	A	L	H	A	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																S	S	S	S											G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	A	I	L	G	A	A	A	L	G	K	N	A	D	S	R	G	L	L	R	E	A	F	R	Q	V	Q	E	K	G	Y	K	I	G	N	V	D	I	T	H	I	D	A	M	R	A	K	I	A	E	D	L	Q	C	D	I	E	Q	V	N	I	A	C	E	A	V	A	L	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T				T	T															T	T	T																										G	G	G
	.	.
Sequence	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)