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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5eixB_

Fold library idPDB HeaderMoleculeTitle
c5eixB_3.35PDB header: isomerase/dnaChain: B: PDB Molecule: dna topoisomerase 4 subunit b,dna topoisomerase 4 subunit


Added to library: Sat Apr 16 08:32:56 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI
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Known secondary structure (DSSP)


B

S


TTT
S
TT

SSS

S



TTSS
TTGGGTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALPPLYRIDLGKEVYYA
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Known secondary structure (DSSP) T

TTT

SSS


S

SS
TT



STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LTEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLVISDEDEQQTTAIMDMLLA
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Known secondary structure (DSSP) SSGGGSSS




S
SSSS
T
TTT



TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KKRSEDRRNWLQEKGMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA
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Known secondary structure (DSSP) SS

T


STTS
BTTT


TT

TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLGDGQGNWGAPKSFAAMRYTESRLSKYAEL
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Known secondary structure (DSSP)

T

S

TTT
SS


S









TTT


STT
 .........360.........370.........380.........390.........400.........410.........420
Sequence LLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKT
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Known secondary structure (DSSP) TTSTTT
S

SSSSSSS


SS
T


SS






TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence TLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGAVVITALPHQVSGAKVLEQIA
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Known secondary structure (DSSP)
TT

S


TT
SB

S
SSSS

TT

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence AQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK
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Known secondary structure (DSSP) TTS
SS


SS
S

SSTTS
STT

TTSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence NLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISE
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Known secondary structure (DSSP)
TTTSSS
T

 .........640.........650.........660.........670.........680.........690.........700
Sequence TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDDRRSPLH
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Known secondary structure (DSSP) T

GGGGS
T



SS
 .
Sequence E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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